Wall clock time and date at job start Mon Mar 30 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99454 * 2 1 4 4 H 1.48494 * 109.47164 * 269.99766 * 3 2 1 5 5 H 1.48496 * 109.47236 * 30.00343 * 3 2 1 6 6 H 1.48507 * 109.46844 * 149.99679 * 3 2 1 7 7 C 1.37874 * 120.00714 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 180.02562 * 7 2 1 10 10 C 1.47206 * 109.46910 * 179.97438 * 9 7 2 11 11 C 4.80443 * 129.85101 * 179.97438 * 2 1 3 12 12 C 6.16708 * 125.21373 * 179.97438 * 2 1 3 13 13 C 1.39551 * 120.12355 * 272.63975 * 12 11 10 14 14 C 1.37951 * 119.86313 * 179.76440 * 13 12 11 15 15 C 1.38467 * 120.13088 * 0.48937 * 14 13 12 16 16 Cl 1.73598 * 119.86922 * 179.74046 * 15 14 13 17 17 C 1.38466 * 120.25850 * 359.76680 * 15 14 13 18 18 C 1.37945 * 120.12782 * 359.97438 * 17 15 14 19 19 H 0.96992 * 120.00516 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46811 * 60.00119 * 9 7 2 21 21 H 1.08992 * 109.46824 * 299.99945 * 9 7 2 22 22 H 1.07995 * 120.06838 * 359.97438 * 13 12 11 23 23 H 1.07998 * 119.93395 * 180.22892 * 14 13 12 24 24 H 1.08001 * 119.93664 * 179.97438 * 17 15 14 25 25 H 1.08006 * 120.06674 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1938 0.0000 10 6 4.0024 -2.5817 -0.0001 11 6 4.3938 -3.6884 0.0016 12 6 4.8713 -5.0385 0.0023 13 6 5.0522 -5.7169 1.2083 14 6 5.5078 -7.0190 1.2024 15 6 5.7950 -7.6494 0.0035 16 17 6.3743 -9.2859 0.0044 17 6 5.6225 -6.9796 -1.1960 18 6 5.1624 -5.6791 -1.2028 19 1 -0.4850 0.8399 -0.0004 20 1 3.8745 -0.6806 0.8905 21 1 3.8752 -0.6794 -0.8894 22 1 4.8328 -5.2246 2.1442 23 1 5.6447 -7.5463 2.1349 24 1 5.8485 -7.4762 -2.1280 25 1 5.0286 -5.1573 -2.1389 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247710186.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:42 Heat of formation + Delta-G solvation = 36.151040 kcal Electronic energy + Delta-G solvation = -11043.310704 eV Core-core repulsion = 8819.712446 eV Total energy + Delta-G solvation = -2223.598258 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.27564 -37.52494 -36.07355 -34.46956 -32.36136 -32.15218 -29.74909 -25.26630 -23.77766 -23.56958 -19.20734 -19.05886 -17.60365 -16.56257 -16.47522 -15.63948 -15.04915 -14.71421 -14.66425 -14.53676 -14.31498 -13.47892 -13.01118 -12.80960 -12.69107 -12.59112 -12.10408 -11.83954 -11.75317 -11.19172 -11.02453 -10.70294 -10.11789 -9.30479 -8.35176 -6.44981 -0.24801 0.25712 1.08619 1.39576 1.41859 1.53648 1.72002 1.89950 2.33730 2.87573 3.00102 3.26670 3.82089 3.87707 4.24615 4.40361 4.47825 4.73100 4.86140 4.93273 5.10621 5.15006 5.24569 5.42374 5.45928 5.70133 6.14585 6.51039 6.73927 7.19322 8.81394 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.082318 B = 0.004279 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.062008 B = 6541.768259 C = 6578.063600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.238 1.238 7 C -0.541 4.541 8 H 0.024 0.976 9 C 0.082 3.918 10 C -0.109 4.109 11 C -0.220 4.220 12 C 0.021 3.979 13 C -0.098 4.098 14 C -0.102 4.102 15 C -0.040 4.040 16 Cl -0.061 7.061 17 C -0.102 4.102 18 C -0.098 4.098 19 H 0.272 0.728 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.140 0.860 23 H 0.161 0.839 24 H 0.161 0.839 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.794 -13.510 0.005 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.161 1.161 7 C -0.578 4.578 8 H 0.042 0.958 9 C 0.046 3.954 10 C -0.109 4.109 11 C -0.221 4.221 12 C 0.021 3.979 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.067 4.067 16 Cl -0.032 7.032 17 C -0.120 4.120 18 C -0.116 4.116 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.157 0.843 23 H 0.178 0.822 24 H 0.179 0.821 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.691 -13.568 0.008 19.998 hybrid contribution -0.410 0.637 -0.012 0.758 sum 14.282 -12.931 -0.004 19.266 Atomic orbital electron populations 1.70044 1.08523 1.28809 1.51028 1.26057 0.95783 1.03753 0.93184 0.85533 0.79622 0.77040 0.79755 1.18507 1.20557 1.16069 1.21042 0.90341 0.93464 1.52987 0.95780 1.16978 0.94059 0.84962 0.99393 1.23227 0.94964 0.95337 0.97405 1.19531 1.04461 0.92999 1.05062 1.16187 0.99296 0.87285 0.95124 1.21348 0.98455 0.94354 0.97469 1.21170 0.98796 0.93904 0.98166 1.21148 1.02907 0.87295 0.95333 1.98368 1.87051 1.18830 1.98948 1.21172 0.99111 0.93602 0.98131 1.21348 0.98106 0.94671 0.97451 0.91917 0.92002 0.92081 0.84264 0.82165 0.82124 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.96 21.45 0.30 -58.34 15 2 C 0.01 0.59 5.47 84.65 0.46 1.05 15 3 Si 0.96 41.95 27.47 68.60 1.88 43.84 15 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 6 H -0.24 -9.35 6.54 99.48 0.65 -8.70 15 7 C -0.54 -31.74 9.63 25.60 0.25 -31.50 15 8 H 0.02 1.60 7.98 -2.91 -0.02 1.57 15 9 C 0.08 3.94 4.53 28.04 0.13 4.06 15 10 C -0.11 -5.00 13.28 31.13 0.41 -4.59 15 11 C -0.22 -9.04 13.24 30.02 0.40 -8.64 15 12 C 0.02 0.69 5.73 -21.40 -0.12 0.57 15 13 C -0.10 -2.65 9.75 22.52 0.22 -2.43 15 14 C -0.10 -2.20 9.81 22.26 0.22 -1.98 15 15 C -0.04 -0.85 6.32 22.38 0.14 -0.71 15 16 Cl -0.06 -1.10 28.95 -2.72 -0.08 -1.18 15 17 C -0.10 -2.18 9.81 22.25 0.22 -1.97 15 18 C -0.10 -2.62 9.75 22.51 0.22 -2.40 15 19 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 20 H 0.06 2.77 7.20 -2.39 -0.02 2.75 15 21 H 0.06 2.69 7.57 -2.39 -0.02 2.67 15 22 H 0.14 3.55 8.06 -2.91 -0.02 3.52 15 23 H 0.16 2.58 8.06 -2.91 -0.02 2.55 15 24 H 0.16 2.55 8.06 -2.91 -0.02 2.53 15 25 H 0.14 3.51 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -66.29 251.73 5.79 -60.51 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.14 Total: 3.71 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 2.54 Total: -48.53 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.30 Total: -58.34 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.84 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -66.29 5.79 -60.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247710186.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.656 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds