Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99940 * 2 1 4 4 H 1.48508 * 109.46985 * 270.00384 * 3 2 1 5 5 H 1.48504 * 109.46970 * 29.99685 * 3 2 1 6 6 H 1.48492 * 109.47331 * 150.00125 * 3 2 1 7 7 C 1.37875 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00153 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00086 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.24229 * 59.44092 * 9 7 2 11 11 C 1.52592 * 109.24406 * 300.00093 * 9 7 2 12 12 C 1.53031 * 109.98835 * 169.74998 * 11 9 7 13 13 S 1.81669 * 108.99897 * 63.65024 * 12 11 9 14 14 O 1.42099 * 108.66329 * 60.02740 * 13 12 11 15 15 O 1.42101 * 108.66667 * 191.37258 * 13 12 11 16 16 C 1.81675 * 101.30768 * 305.70005 * 13 12 11 17 17 C 1.52586 * 109.21489 * 178.86496 * 9 7 2 18 18 H 1.09000 * 109.38630 * 70.21489 * 17 9 7 19 19 O 1.42902 * 109.38537 * 310.42630 * 17 9 7 20 20 H 0.96992 * 120.00308 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.38469 * 49.59275 * 11 9 7 22 22 H 1.09003 * 109.29870 * 289.85849 * 11 9 7 23 23 H 1.08996 * 109.55285 * 303.79369 * 12 11 9 24 24 H 1.09004 * 109.55388 * 183.50154 * 12 11 9 25 25 H 1.08991 * 109.55092 * 174.15321 * 16 13 12 26 26 H 1.09007 * 109.55027 * 294.44630 * 16 13 12 27 27 H 0.96698 * 114.00201 * 180.02562 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8711 -0.6702 0.8856 11 6 4.0140 -0.4745 -1.2484 12 6 5.5225 -0.2392 -1.1449 13 16 6.3701 -1.8454 -1.1009 14 8 6.0674 -2.5522 -2.2959 15 8 7.7285 -1.6332 -0.7416 16 6 5.5223 -2.6577 0.2855 17 6 4.0137 -2.6346 0.0293 18 1 3.8037 -3.1105 -0.9286 19 8 3.3447 -3.3490 1.0705 20 1 -0.4850 0.8400 -0.0004 21 1 3.5039 0.4841 -1.3434 22 1 3.8024 -1.0854 -2.1260 23 1 5.7435 0.3150 -0.2327 24 1 5.8632 0.3293 -2.0103 25 1 5.8627 -3.6898 0.3669 26 1 5.7432 -2.1251 1.2106 27 1 3.6146 -4.2743 1.1489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257810622.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = -148.330057 kcal Electronic energy + Delta-G solvation = -13983.836929 eV Core-core repulsion = 11446.973757 eV Total energy + Delta-G solvation = -2536.863172 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.46418 -37.99705 -37.10040 -36.26362 -34.23184 -31.58939 -30.01980 -25.38198 -24.36824 -21.50696 -19.85422 -18.88075 -18.51697 -17.51204 -17.38056 -16.73008 -16.54890 -15.44246 -15.12396 -14.74245 -14.33558 -14.16474 -13.78626 -13.53211 -13.22588 -13.10296 -12.86492 -12.66500 -12.17390 -12.07534 -11.76582 -11.40985 -11.33431 -10.96784 -10.75611 -10.67445 -8.25362 -6.29472 -0.92033 1.30444 1.37455 1.47014 1.70483 2.33880 2.66573 2.92880 3.07733 3.51738 3.60558 3.83621 3.92849 3.97797 4.19925 4.34052 4.63467 4.77826 4.82531 4.91312 5.10313 5.52249 5.63016 6.32313 6.77755 7.08484 7.33603 8.91511 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.038389 B = 0.012491 C = 0.010454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.208481 B = 2241.066191 C = 2677.709956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.934 3.066 4 H -0.258 1.258 5 H -0.304 1.304 6 H -0.228 1.228 7 C -0.500 4.500 8 H 0.038 0.962 9 C -0.009 4.009 10 H 0.051 0.949 11 C -0.120 4.120 12 C -0.601 4.601 13 S 2.444 3.556 14 O -0.970 6.970 15 O -0.970 6.970 16 C -0.631 4.631 17 C 0.138 3.862 18 H 0.065 0.935 19 O -0.560 6.560 20 H 0.264 0.736 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.153 0.847 24 H 0.157 0.843 25 H 0.162 0.838 26 H 0.157 0.843 27 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.596 -1.632 -0.332 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.760 3.240 4 H -0.184 1.184 5 H -0.232 1.232 6 H -0.151 1.151 7 C -0.538 4.538 8 H 0.056 0.944 9 C -0.028 4.028 10 H 0.069 0.931 11 C -0.158 4.158 12 C -0.732 4.732 13 S 2.628 3.372 14 O -0.967 6.967 15 O -0.967 6.967 16 C -0.761 4.761 17 C 0.078 3.922 18 H 0.083 0.917 19 O -0.366 6.366 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.104 0.896 23 H 0.171 0.829 24 H 0.175 0.825 25 H 0.180 0.820 26 H 0.175 0.825 27 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 13.877 -1.298 -0.793 13.960 hybrid contribution -0.772 0.466 0.444 1.005 sum 13.105 -0.832 -0.349 13.136 Atomic orbital electron populations 1.70054 1.08404 1.27912 1.52897 1.25981 0.95533 1.03174 0.94618 0.86063 0.80149 0.78596 0.79183 1.18437 1.23165 1.15069 1.21040 0.90540 0.93179 1.49080 0.94376 1.19409 0.95876 0.92262 0.95225 0.93105 1.21725 0.90929 1.02467 1.00701 1.30276 1.07064 1.21984 1.13846 1.07089 0.75130 0.78486 0.76484 1.93531 1.86017 1.72085 1.45114 1.93539 1.32274 1.86028 1.84887 1.30977 1.07988 1.16424 1.20699 1.21269 0.85821 0.94063 0.91053 0.91721 1.86748 1.67022 1.27596 1.55230 0.92700 0.91404 0.89648 0.82889 0.82467 0.82017 0.82514 0.76768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.84 13.96 21.45 0.30 -58.54 15 2 C 0.00 0.18 5.45 84.65 0.46 0.64 15 3 Si 0.93 41.30 24.42 68.60 1.68 42.98 15 4 H -0.26 -10.64 6.80 99.48 0.68 -9.96 15 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 15 6 H -0.23 -8.65 6.51 99.48 0.65 -8.00 15 7 C -0.50 -27.30 8.65 25.60 0.22 -27.08 15 8 H 0.04 2.37 7.61 -2.91 -0.02 2.35 15 9 C -0.01 -0.36 1.29 -11.81 -0.02 -0.38 15 10 H 0.05 2.01 7.10 -2.39 -0.02 1.99 15 11 C -0.12 -4.24 4.46 30.47 0.14 -4.11 15 12 C -0.60 -15.11 6.35 71.99 0.46 -14.65 15 13 S 2.44 62.18 5.31 -56.49 -0.30 61.88 15 14 O -0.97 -30.99 17.93 -127.40 -2.28 -33.27 15 15 O -0.97 -28.33 18.10 -127.40 -2.31 -30.63 15 16 C -0.63 -14.72 5.96 72.00 0.43 -14.30 15 17 C 0.14 4.67 2.80 30.47 0.09 4.75 15 18 H 0.06 2.19 8.00 -2.39 -0.02 2.17 15 19 O -0.56 -20.08 12.36 -148.98 -1.84 -21.92 15 20 H 0.26 15.33 8.31 -92.71 -0.77 14.55 15 21 H 0.07 2.58 3.22 -2.38 -0.01 2.57 15 22 H 0.08 2.97 8.01 -2.39 -0.02 2.95 15 23 H 0.15 3.18 8.14 -2.39 -0.02 3.16 15 24 H 0.16 3.09 8.14 -2.39 -0.02 3.07 15 25 H 0.16 2.71 8.14 -2.39 -0.02 2.69 15 26 H 0.16 3.13 8.14 -2.38 -0.02 3.11 15 27 H 0.38 9.07 9.08 -74.06 -0.67 8.40 15 Total: -1.00 -76.14 231.35 -2.56 -78.69 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.43 Total: 15.93 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 1.77 Total: -55.12 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.30 Total: -58.54 kcal Atomic # 8 Polarization: -79.39 SS G_CDS: -6.43 Total: -85.82 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.68 Total: 42.98 kcal Atomic # 16 Polarization: 62.18 SS G_CDS: -0.30 Total: 61.88 kcal Total: -76.14 -2.56 -78.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257810622.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.635 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds