Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48500 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47301 * 299.99821 * 3 2 1 6 6 H 1.48497 * 109.47369 * 60.00034 * 3 2 1 7 7 C 1.37869 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00090 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.38813 * 300.21124 * 9 7 2 11 11 C 1.53043 * 109.38705 * 60.00017 * 9 7 2 12 12 S 1.81664 * 109.00023 * 183.70088 * 11 9 7 13 13 O 1.42099 * 108.66187 * 191.37082 * 12 11 9 14 14 O 1.42103 * 108.66339 * 60.03123 * 12 11 9 15 15 C 1.81667 * 101.31039 * 305.70188 * 12 11 9 16 16 C 1.53036 * 109.07712 * 54.24906 * 15 12 11 17 17 C 1.52577 * 109.99385 * 296.49981 * 16 15 12 18 18 H 1.09006 * 109.22446 * 190.18452 * 17 16 15 19 19 O 1.42898 * 109.16863 * 309.53449 * 17 16 15 20 20 H 0.97006 * 119.99818 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.54702 * 63.84141 * 11 9 7 22 22 H 1.08997 * 109.54656 * 303.56307 * 11 9 7 23 23 H 1.09002 * 109.55114 * 174.15516 * 15 12 11 24 24 H 1.09003 * 109.55002 * 294.34826 * 15 12 11 25 25 H 1.09002 * 109.38404 * 56.55963 * 16 15 12 26 26 H 1.09000 * 109.38534 * 176.24323 * 16 15 12 27 27 H 0.96698 * 114.00370 * 301.21227 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6223 -2.5532 0.8905 11 6 0.3714 -2.5790 -1.2481 12 16 -0.6136 -4.1040 -1.1817 13 8 -1.2230 -4.3072 -2.4492 14 8 -1.4249 -4.0709 -0.0155 15 6 0.6829 -5.3558 -0.9526 16 6 1.5311 -4.9804 0.2646 17 6 2.2459 -3.6559 0.0139 18 1 2.9804 -3.4896 0.8020 19 8 2.9149 -3.7152 -1.2474 20 1 -0.4850 0.8401 -0.0004 21 1 1.0015 -2.5901 -2.1375 22 1 -0.2939 -1.7162 -1.2817 23 1 0.2238 -6.3310 -0.7905 24 1 1.3148 -5.3931 -1.8400 25 1 0.8867 -4.8823 1.1383 26 1 2.2685 -5.7622 0.4468 27 1 3.5648 -4.4280 -1.3148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257831392.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = -156.155922 kcal Electronic energy + Delta-G solvation = -14067.811767 eV Core-core repulsion = 11530.609240 eV Total energy + Delta-G solvation = -2537.202527 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.44442 -37.82932 -36.89971 -35.57317 -33.94699 -32.06838 -28.14839 -27.07292 -23.79596 -21.31468 -19.64467 -18.67855 -17.75093 -17.37549 -17.04359 -16.54222 -16.46836 -15.86045 -15.02116 -14.37988 -14.12031 -13.85020 -13.25166 -13.12911 -12.98210 -12.94354 -12.73369 -12.53019 -12.43946 -12.17067 -12.02153 -11.53335 -11.04139 -10.81341 -10.58322 -10.33518 -8.14088 -6.27429 -0.64768 1.40915 1.43606 1.54268 2.01308 2.42061 2.89697 3.09946 3.25093 3.65540 3.84089 3.99169 4.19080 4.40338 4.42650 4.58758 4.73421 5.01199 5.05180 5.12666 5.41559 5.77232 5.85201 6.23899 6.82649 7.22972 7.42110 8.91487 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.038026 B = 0.012012 C = 0.010240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.157453 B = 2330.459238 C = 2733.662116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.052 3.948 10 H 0.033 0.967 11 C -0.558 4.558 12 S 2.390 3.610 13 O -1.002 7.002 14 O -0.992 6.992 15 C -0.567 4.567 16 C -0.140 4.140 17 C 0.102 3.898 18 H 0.073 0.927 19 O -0.567 6.567 20 H 0.263 0.737 21 H 0.121 0.879 22 H 0.118 0.882 23 H 0.155 0.845 24 H 0.159 0.841 25 H 0.082 0.918 26 H 0.126 0.874 27 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 -10.266 -0.487 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.033 3.967 10 H 0.051 0.949 11 C -0.691 4.691 12 S 2.581 3.419 13 O -1.000 7.000 14 O -0.989 6.989 15 C -0.701 4.701 16 C -0.178 4.178 17 C 0.043 3.957 18 H 0.090 0.910 19 O -0.374 6.374 20 H 0.072 0.928 21 H 0.139 0.861 22 H 0.136 0.864 23 H 0.173 0.827 24 H 0.177 0.823 25 H 0.100 0.900 26 H 0.144 0.856 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.794 -9.770 -0.692 10.905 hybrid contribution 0.976 0.933 0.065 1.352 sum 5.770 -8.837 -0.626 10.572 Atomic orbital electron populations 1.69930 1.07417 1.27478 1.51601 1.25817 0.95628 1.02879 0.95084 0.85498 0.79246 0.79547 0.77326 1.18649 1.21191 1.20786 1.21435 0.93342 0.90792 1.48964 0.91655 1.18546 0.92425 0.94573 0.91183 0.94910 1.29939 1.12838 1.17587 1.08711 1.08427 0.79155 0.80989 0.73324 1.93440 1.76521 1.86276 1.43725 1.93460 1.67521 1.87132 1.50789 1.29799 1.15446 1.15641 1.09171 1.22115 1.00768 0.99257 0.95700 1.21895 0.94403 0.92809 0.86609 0.90954 1.86622 1.58278 1.57669 1.34814 0.92790 0.86076 0.86393 0.82697 0.82334 0.89955 0.85584 0.76484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.18 11.29 21.44 0.24 -52.93 15 2 C 0.00 0.22 5.30 84.65 0.45 0.67 15 3 Si 0.96 42.90 29.54 68.60 2.03 44.92 15 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 15 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 15 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 7 C -0.51 -26.22 8.37 25.60 0.21 -26.01 15 8 H 0.07 3.29 7.74 -2.91 -0.02 3.27 15 9 C 0.05 2.39 1.77 -11.66 -0.02 2.37 15 10 H 0.03 1.66 8.02 -2.39 -0.02 1.64 15 11 C -0.56 -25.25 5.26 72.00 0.38 -24.87 15 12 S 2.39 92.35 5.31 -56.49 -0.30 92.05 15 13 O -1.00 -43.64 18.10 -127.40 -2.31 -45.95 15 14 O -0.99 -45.53 17.95 -127.40 -2.29 -47.82 15 15 C -0.57 -14.04 6.16 71.99 0.44 -13.60 15 16 C -0.14 -3.42 5.49 30.47 0.17 -3.26 15 17 C 0.10 3.31 2.99 30.32 0.09 3.40 15 18 H 0.07 2.24 8.09 -2.38 -0.02 2.22 15 19 O -0.57 -16.76 10.92 -148.98 -1.63 -18.39 15 20 H 0.26 14.47 8.31 -92.70 -0.77 13.70 15 21 H 0.12 5.21 7.35 -2.39 -0.02 5.20 15 22 H 0.12 6.28 5.98 -2.39 -0.01 6.27 15 23 H 0.16 2.85 8.14 -2.39 -0.02 2.83 15 24 H 0.16 3.23 7.36 -2.39 -0.02 3.22 15 25 H 0.08 2.18 8.03 -2.39 -0.02 2.16 15 26 H 0.13 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.39 6.69 9.06 -74.06 -0.67 6.02 15 Total: -1.00 -73.28 236.01 -2.02 -75.30 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.51 Total: 14.12 kcal Atomic # 6 Polarization: -63.02 SS G_CDS: 1.72 Total: -61.29 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.24 Total: -52.93 kcal Atomic # 8 Polarization: -105.94 SS G_CDS: -6.22 Total: -112.16 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 92.35 SS G_CDS: -0.30 Total: 92.05 kcal Total: -73.28 -2.02 -75.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257831392.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.856 kcal (2) G-P(sol) polarization free energy of solvation -73.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds