Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48505 * 109.47220 * 270.00019 * 3 2 1 5 5 H 1.48496 * 109.47334 * 29.99816 * 3 2 1 6 6 H 1.48495 * 109.47056 * 150.00230 * 3 2 1 7 7 C 1.38759 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.36846 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.39377 * 119.99959 * 179.97438 * 9 7 2 11 11 C 1.39238 * 120.00297 * 0.27770 * 10 9 7 12 12 C 1.37949 * 120.21987 * 180.27735 * 11 10 9 13 13 C 1.38711 * 120.03172 * 359.44278 * 12 11 10 14 14 O 1.35623 * 132.88516 * 180.25672 * 13 12 11 15 15 C 1.34210 * 109.18656 * 180.02562 * 14 13 12 16 16 O 1.21597 * 125.25944 * 180.02562 * 15 14 13 17 17 N 1.34763 * 109.47717 * 359.97438 * 15 14 13 18 18 H 0.96998 * 126.24730 * 180.02562 * 17 15 14 19 19 C 1.39476 * 107.50280 * 359.97438 * 17 15 14 20 20 C 1.38473 * 133.28622 * 179.97438 * 19 17 15 21 21 H 0.96999 * 120.00684 * 359.97438 * 1 2 3 22 22 H 0.96997 * 119.99568 * 0.02562 * 9 7 2 23 23 H 1.07994 * 119.89190 * 0.02562 * 11 10 9 24 24 H 1.08002 * 119.98658 * 179.72670 * 12 11 10 25 25 H 1.07994 * 120.12003 * 0.04946 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0100 -1.2017 0.0005 8 1 3.0900 -1.2016 0.0001 9 7 1.3258 -2.3868 0.0005 10 6 2.0228 -3.5938 0.0005 11 6 3.4151 -3.5938 0.0064 12 6 4.1095 -4.7858 0.0006 13 6 3.4212 -5.9901 0.0007 14 8 3.8261 -7.2845 0.0004 15 6 2.7480 -8.0839 0.0000 16 8 2.7755 -9.2995 0.0001 17 7 1.6303 -7.3309 0.0007 18 1 0.7176 -7.6592 0.0010 19 6 2.0257 -5.9934 0.0021 20 6 1.3281 -4.7972 0.0028 21 1 -0.4851 0.8400 0.0004 22 1 0.3558 -2.3868 -0.0002 23 1 3.9533 -2.6575 0.0113 24 1 5.1895 -4.7814 0.0007 25 1 0.2482 -4.7996 0.0030 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258857235.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -37.886589 kcal Electronic energy + Delta-G solvation = -13950.660529 eV Core-core repulsion = 11315.435346 eV Total energy + Delta-G solvation = -2635.225184 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.94639 -39.79981 -38.60835 -36.77217 -35.68538 -33.51148 -30.98309 -29.02127 -26.57253 -24.25601 -23.76156 -23.24141 -19.97645 -19.45424 -18.76504 -18.18575 -17.67946 -16.69033 -16.40929 -16.10647 -15.43203 -14.87408 -14.46053 -14.41753 -13.88630 -13.86956 -13.14737 -13.11926 -12.57822 -12.55595 -12.25480 -12.05159 -11.62776 -11.38422 -10.46090 -9.33383 -8.48321 -8.46667 -5.71874 0.40220 0.61613 1.46382 1.48931 1.49752 1.52570 1.59630 2.11342 2.32288 2.76291 3.30510 3.37347 3.75719 4.07146 4.49780 4.56215 4.61000 4.94002 5.14880 5.28257 5.48265 5.60535 5.66900 5.74276 5.89434 6.40199 6.78458 6.82346 7.44434 7.57885 8.69032 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.077901 B = 0.006186 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.342608 B = 4525.192298 C = 4874.691886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.026 4.026 3 Si 0.995 3.005 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.317 4.317 8 H 0.116 0.884 9 N -0.566 5.566 10 C 0.214 3.786 11 C -0.206 4.206 12 C -0.009 4.009 13 C -0.114 4.114 14 O -0.247 6.247 15 C 0.633 3.367 16 O -0.542 6.542 17 N -0.632 5.632 18 H 0.450 0.550 19 C 0.130 3.870 20 C -0.231 4.231 21 H 0.275 0.725 22 H 0.396 0.604 23 H 0.140 0.860 24 H 0.154 0.846 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -3.680 0.028 4.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.225 4.225 3 Si 0.819 3.181 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.447 4.447 8 H 0.134 0.866 9 N -0.168 5.168 10 C 0.093 3.907 11 C -0.230 4.230 12 C -0.029 4.029 13 C -0.162 4.162 14 O -0.152 6.152 15 C 0.388 3.612 16 O -0.431 6.431 17 N -0.289 5.289 18 H 0.295 0.705 19 C 0.030 3.970 20 C -0.260 4.260 21 H 0.084 0.916 22 H 0.230 0.770 23 H 0.158 0.842 24 H 0.172 0.828 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.489 -3.933 0.034 5.257 hybrid contribution -1.009 0.527 -0.019 1.139 sum 2.479 -3.405 0.015 4.212 Atomic orbital electron populations 1.69782 1.07391 1.29303 1.49995 1.26135 0.96422 1.02968 0.97005 0.84856 0.78259 0.76546 0.78451 1.20040 1.21220 1.17957 1.20112 0.93830 0.83053 1.47689 0.86648 1.41043 1.08004 1.02174 1.65625 1.17754 0.92118 0.85500 0.95352 1.20465 0.92002 0.97647 1.12872 1.19763 1.00424 0.86127 0.96589 1.18735 0.91454 0.82820 1.23172 1.84770 1.32946 1.16661 1.80873 1.18534 0.79251 0.85246 0.78176 1.91087 1.84675 1.08208 1.59098 1.43397 1.10359 1.04750 1.70440 0.70530 1.17942 0.92824 0.84692 1.01514 1.19012 0.99265 0.87391 1.20318 0.91559 0.77030 0.84229 0.82842 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -46.59 13.05 21.64 0.28 -46.31 15 2 C -0.03 -1.20 5.50 84.85 0.47 -0.74 15 3 Si 0.99 37.24 29.55 68.60 2.03 39.27 15 4 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 5 H -0.29 -10.86 7.11 99.48 0.71 -10.15 15 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 7 C -0.32 -14.54 9.55 84.04 0.80 -13.74 15 8 H 0.12 4.89 5.67 -2.91 -0.02 4.88 15 9 N -0.57 -24.72 5.44 -184.24 -1.00 -25.73 15 10 C 0.21 8.22 6.62 38.35 0.25 8.48 15 11 C -0.21 -7.19 9.29 22.44 0.21 -6.98 15 12 C -0.01 -0.29 10.05 22.31 0.22 -0.06 15 13 C -0.11 -3.92 7.36 22.70 0.17 -3.75 15 14 O -0.25 -8.84 10.72 8.01 0.09 -8.76 15 15 C 0.63 22.01 9.44 129.79 1.23 23.23 15 16 O -0.54 -21.12 18.05 19.20 0.35 -20.77 15 17 N -0.63 -18.41 6.22 -430.09 -2.68 -21.09 15 18 H 0.45 9.92 8.96 -92.71 -0.83 9.09 15 19 C 0.13 4.29 7.25 38.30 0.28 4.56 15 20 C -0.23 -7.93 9.92 22.50 0.22 -7.70 15 21 H 0.28 13.21 8.31 -92.71 -0.77 12.43 15 22 H 0.40 17.88 7.89 -92.71 -0.73 17.15 15 23 H 0.14 4.71 5.94 -2.91 -0.02 4.70 15 24 H 0.15 3.84 8.06 -2.91 -0.02 3.81 15 25 H 0.13 4.06 8.06 -2.91 -0.02 4.04 15 Total: -1.00 -54.47 232.23 2.62 -51.85 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.29 Total: 28.23 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 3.85 Total: 3.30 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -3.40 Total: -93.12 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: 0.43 Total: -29.53 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -54.47 2.62 -51.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258857235.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.965 kcal (2) G-P(sol) polarization free energy of solvation -54.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds