Wall clock time and date at job start Mon Mar 30 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31648 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48497 * 109.47223 * 269.99977 * 3 2 1 5 5 H 1.48496 * 109.47144 * 30.00341 * 3 2 1 6 6 H 1.48501 * 109.46914 * 150.00393 * 3 2 1 7 7 C 1.38694 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00029 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99959 * 0.27244 * 7 2 1 10 10 C 1.76200 * 99.99825 * 174.61490 * 9 7 2 11 11 C 1.39577 * 119.84030 * 274.28393 * 10 9 7 12 12 C 1.36645 * 120.51077 * 179.77229 * 11 10 9 13 13 C 1.38915 * 120.07924 * 0.49618 * 12 11 10 14 14 N 1.38164 * 133.97143 * 179.79496 * 13 12 11 15 15 H 0.97003 * 126.34592 * 359.97438 * 14 13 12 16 16 C 1.36015 * 107.31253 * 179.97438 * 14 13 12 17 17 N 1.30107 * 110.12207 * 0.02562 * 16 14 13 18 18 C 1.35793 * 109.64270 * 359.97438 * 17 16 14 19 19 C 1.38491 * 119.83957 * 94.56068 * 10 9 7 20 20 H 0.96999 * 120.00505 * 359.97438 * 1 2 3 21 21 H 1.07997 * 119.73937 * 0.02562 * 11 10 9 22 22 H 1.08004 * 119.96025 * 180.27844 * 12 11 10 23 23 H 1.08008 * 124.93643 * 179.97438 * 16 14 13 24 24 H 1.07996 * 120.22696 * 359.95553 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0465 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4401 0.7000 7 6 2.0100 -1.2011 -0.0005 8 1 3.0900 -1.2011 -0.0010 9 16 1.1290 -2.7270 -0.0085 10 6 2.4729 -3.8553 -0.1690 11 6 2.9675 -4.1706 -1.4355 12 6 4.0121 -5.0403 -1.5756 13 6 4.5848 -5.6269 -0.4542 14 7 5.6191 -6.5228 -0.2627 15 1 6.1658 -6.9262 -0.9551 16 6 5.7286 -6.7345 1.0764 17 7 4.8370 -6.0340 1.7146 18 6 4.0939 -5.3237 0.8275 19 6 3.0295 -4.4293 0.9618 20 1 -0.4851 0.8400 0.0004 21 1 2.5237 -3.7207 -2.3112 22 1 4.3907 -5.2745 -2.5596 23 1 6.4501 -7.3895 1.5421 24 1 2.6432 -4.1871 1.9408 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259087608.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:51 Heat of formation + Delta-G solvation = 64.795086 kcal Electronic energy + Delta-G solvation = -11763.899451 eV Core-core repulsion = 9575.879750 eV Total energy + Delta-G solvation = -2188.019701 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.73918 -36.68342 -32.88706 -32.45199 -29.53201 -28.94989 -25.51104 -22.93371 -22.06578 -21.12993 -17.89907 -17.82233 -16.64578 -15.58572 -14.92677 -14.80363 -14.17256 -13.54212 -13.44811 -13.11647 -12.18708 -11.69843 -11.27571 -11.06477 -10.94148 -10.73614 -10.48043 -9.90338 -9.69683 -9.10681 -8.74581 -7.87352 -7.63521 -6.63707 -6.22997 -3.96073 1.37893 1.80071 3.06471 3.08764 3.23169 3.25034 3.30919 3.54356 4.14719 4.33699 4.55094 4.90274 5.12862 5.42475 5.54525 5.61577 5.72763 5.91932 6.00013 6.44555 6.70646 6.86141 7.07243 7.18136 7.50303 7.63189 8.09250 8.38834 9.22530 10.83335 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.047450 B = 0.007325 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.957659 B = 3821.619334 C = 3925.960081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.075 0.925 9 S -0.034 6.034 10 C -0.109 4.109 11 C -0.053 4.053 12 C -0.134 4.134 13 C 0.049 3.951 14 N -0.608 5.608 15 H 0.419 0.581 16 C 0.242 3.758 17 N -0.493 5.493 18 C 0.033 3.967 19 C -0.025 4.025 20 H 0.269 0.731 21 H 0.135 0.865 22 H 0.117 0.883 23 H 0.211 0.789 24 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.052 -11.008 -2.510 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.665 4.665 8 H 0.093 0.907 9 S 0.200 5.800 10 C -0.222 4.222 11 C -0.075 4.075 12 C -0.157 4.157 13 C -0.061 4.061 14 N -0.221 5.221 15 H 0.256 0.744 16 C -0.045 4.045 17 N -0.212 5.212 18 C -0.085 4.085 19 C -0.048 4.048 20 H 0.078 0.922 21 H 0.153 0.847 22 H 0.135 0.865 23 H 0.227 0.773 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.523 -10.977 -1.489 13.977 hybrid contribution 2.451 0.871 -1.322 2.918 sum 10.974 -10.106 -2.811 15.181 Atomic orbital electron populations 1.70000 1.05853 1.27538 1.47379 1.24991 0.95111 0.99041 0.94539 0.86137 0.79526 0.81375 0.78377 1.20251 1.20713 1.19620 1.22859 0.94942 0.90355 1.58305 0.90667 1.83557 1.04229 0.96997 1.95186 1.22519 1.03464 1.02603 0.93569 1.21296 0.93920 0.94561 0.97759 1.19651 0.99437 1.01323 0.95250 1.18984 0.92992 0.96636 0.97457 1.43115 1.30383 1.39407 1.09170 0.74360 1.25200 0.99560 1.00130 0.79611 1.70388 1.07418 1.10763 1.32680 1.19142 0.99557 1.01415 0.88417 1.20967 0.91731 0.92800 0.99279 0.92154 0.84749 0.86537 0.77268 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.60 13.22 55.49 0.73 -24.87 14 2 C 0.07 2.03 5.49 -17.46 -0.10 1.93 14 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 14 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 14 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 14 7 C -0.52 -14.72 9.46 30.90 0.29 -14.43 14 8 H 0.08 2.13 7.79 -52.48 -0.41 1.72 14 9 S -0.03 -0.88 21.39 -107.50 -2.30 -3.18 14 10 C -0.11 -2.41 5.45 -38.99 -0.21 -2.62 14 11 C -0.05 -1.02 9.72 -39.66 -0.39 -1.41 14 12 C -0.13 -2.17 10.00 -39.91 -0.40 -2.57 14 13 C 0.05 0.80 7.30 -83.89 -0.61 0.18 14 14 N -0.61 -7.14 6.23 -11.71 -0.07 -7.21 14 15 H 0.42 3.10 8.96 -40.82 -0.37 2.73 14 16 C 0.24 2.94 12.97 -89.81 -1.16 1.77 14 17 N -0.49 -8.53 11.27 -12.06 -0.14 -8.67 14 18 C 0.03 0.64 7.23 -84.70 -0.61 0.02 14 19 C -0.03 -0.54 9.85 -38.95 -0.38 -0.92 14 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 14 21 H 0.13 2.46 8.06 -52.49 -0.42 2.04 14 22 H 0.12 1.48 8.06 -52.48 -0.42 1.06 14 23 H 0.21 1.37 8.06 -52.48 -0.42 0.95 14 24 H 0.13 2.83 8.06 -52.49 -0.42 2.41 14 LS Contribution 237.75 15.07 3.58 3.58 Total: -1.00 -33.42 237.75 -8.39 -41.81 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -1.60 Total: 0.04 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.57 Total: -18.03 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.52 Total: -40.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -33.42 -8.39 -41.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259087608.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.607 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds