Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86799 * 119.99742 * 2 1 4 4 H 1.48501 * 109.47042 * 239.99519 * 3 2 1 5 5 H 1.48494 * 109.47426 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47069 * 119.99608 * 3 2 1 7 7 C 1.40025 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.39828 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.31560 * 125.24173 * 179.97438 * 9 7 2 11 11 C 1.31480 * 115.81061 * 180.02562 * 10 9 7 12 12 C 1.47496 * 122.53641 * 180.02562 * 11 10 9 13 13 C 1.36630 * 126.08756 * 0.02562 * 12 11 10 14 14 C 1.40229 * 107.32344 * 179.97438 * 13 12 11 15 15 C 1.35254 * 107.73478 * 0.24308 * 14 13 12 16 16 N 1.36297 * 108.53075 * 359.61021 * 15 14 13 17 17 H 0.96993 * 125.70883 * 180.12046 * 16 15 14 18 18 C 1.37605 * 114.92122 * 0.27247 * 11 10 9 19 19 S 1.70992 * 109.06759 * 359.59474 * 18 11 10 20 20 H 0.97003 * 119.99815 * 0.02562 * 1 2 3 21 21 H 1.07997 * 126.33695 * 359.94253 * 13 12 11 22 22 H 1.08002 * 126.12971 * 179.97438 * 14 13 12 23 23 H 1.07999 * 125.73629 * 179.73535 * 15 14 13 24 24 H 1.08002 * 125.46223 * 179.72863 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0958 1.6965 1.2126 7 6 2.0083 -1.2126 0.0005 8 1 3.0883 -1.2126 0.0010 9 6 1.3091 -2.4236 0.0005 10 7 1.8601 -3.6183 0.0005 11 6 1.0250 -4.6338 0.0000 12 6 1.4815 -6.0363 0.0005 13 6 2.7805 -6.4598 0.0020 14 6 2.7626 -7.8620 0.0025 15 6 1.4692 -8.2575 -0.0041 16 7 0.6771 -7.1483 0.0000 17 1 -0.2929 -7.1454 -0.0015 18 6 -0.3072 -4.2890 -0.0064 19 16 -0.4431 -2.5845 -0.0004 20 1 -0.4850 0.8401 -0.0004 21 1 3.6586 -5.8310 0.0022 22 1 3.6267 -8.5099 0.0033 23 1 1.1223 -9.2802 -0.0096 24 1 -1.1342 -4.9836 -0.0120 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259291198.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 57.943518 kcal Electronic energy + Delta-G solvation = -11852.229548 eV Core-core repulsion = 9663.912741 eV Total energy + Delta-G solvation = -2188.316808 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.34300 -37.22748 -34.14449 -30.51228 -29.92275 -27.58910 -26.19175 -22.78309 -20.49164 -19.76261 -18.86254 -17.74778 -16.54535 -15.33088 -15.08794 -13.77742 -13.74752 -13.08018 -12.89928 -12.46604 -12.30964 -11.86017 -11.72669 -11.56622 -11.38797 -10.63646 -10.49436 -9.73284 -9.54289 -8.33366 -8.18046 -7.84909 -7.81604 -7.12048 -6.67174 -4.78438 2.17354 2.75139 2.91786 2.96341 3.13049 3.45663 3.54626 3.66086 3.79758 3.99274 4.36558 5.19650 5.54154 5.71247 6.00109 6.18682 6.50122 6.67469 6.79310 6.83851 7.05924 7.39298 7.62992 7.72731 7.87932 8.11273 8.27714 8.34700 9.67293 9.77676 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.060389 B = 0.007549 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.549418 B = 3708.423825 C = 4162.128768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.054 3.946 3 Si 0.944 3.056 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.371 4.371 8 H 0.105 0.895 9 C 0.205 3.795 10 N -0.581 5.581 11 C 0.169 3.831 12 C 0.105 3.895 13 C -0.175 4.175 14 C -0.205 4.205 15 C -0.032 4.032 16 N -0.553 5.553 17 H 0.410 0.590 18 C -0.472 4.472 19 S 0.123 5.877 20 H 0.300 0.700 21 H 0.137 0.863 22 H 0.130 0.870 23 H 0.158 0.842 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -3.980 -0.006 4.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.168 4.168 3 Si 0.767 3.233 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.413 4.413 8 H 0.123 0.877 9 C -0.048 4.048 10 N -0.303 5.303 11 C 0.028 3.972 12 C -0.010 4.010 13 C -0.200 4.200 14 C -0.230 4.230 15 C -0.163 4.163 16 N -0.149 5.149 17 H 0.246 0.754 18 C -0.618 4.618 19 S 0.383 5.617 20 H 0.112 0.888 21 H 0.155 0.845 22 H 0.147 0.853 23 H 0.175 0.825 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.167 -3.137 0.000 3.347 hybrid contribution -0.050 -0.477 -0.006 0.479 sum -1.217 -3.614 -0.006 3.813 Atomic orbital electron populations 1.68790 1.07706 1.31017 1.33558 1.26177 0.95138 1.02752 0.92759 0.85718 0.79498 0.77593 0.80449 1.18382 1.19863 1.18376 1.18938 0.95919 0.87332 1.39159 0.87742 1.23810 0.91374 0.93884 0.95742 1.67252 1.34277 0.96739 1.32004 1.17880 0.88292 0.89909 1.01124 1.18366 0.89582 0.85247 1.07785 1.20943 0.95610 0.94063 1.09414 1.20783 0.95592 0.95285 1.11375 1.21702 0.91079 0.90773 1.12758 1.41954 1.08512 1.05518 1.58867 0.75431 1.26338 0.98682 1.04670 1.32083 1.84153 1.11428 0.93676 1.72440 0.88754 0.84490 0.85250 0.82502 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.54 10.63 55.55 0.59 -17.95 14 2 C 0.05 1.25 5.50 -17.31 -0.10 1.16 14 3 Si 0.94 17.27 29.56 -169.99 -5.02 12.25 14 4 H -0.26 -4.71 7.11 56.52 0.40 -4.30 14 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 6 H -0.26 -4.70 7.11 56.52 0.40 -4.30 14 7 C -0.37 -9.58 9.43 -38.32 -0.36 -9.94 14 8 H 0.10 2.59 7.85 -52.49 -0.41 2.18 14 9 C 0.21 5.66 7.11 -17.07 -0.12 5.53 14 10 N -0.58 -16.12 10.52 -9.60 -0.10 -16.22 14 11 C 0.17 4.33 6.70 -84.48 -0.57 3.77 14 12 C 0.10 2.33 6.97 -82.25 -0.57 1.76 14 13 C -0.17 -3.68 10.67 -39.41 -0.42 -4.10 14 14 C -0.20 -3.54 10.83 -39.90 -0.43 -3.97 14 15 C -0.03 -0.49 11.93 -16.63 -0.20 -0.69 14 16 N -0.55 -9.85 6.03 -9.40 -0.06 -9.91 14 17 H 0.41 6.24 8.59 -40.82 -0.35 5.89 14 18 C -0.47 -11.62 10.85 30.50 0.33 -11.29 14 19 S 0.12 3.14 20.10 -107.50 -2.16 0.97 14 20 H 0.30 6.34 8.30 -40.82 -0.34 6.00 14 21 H 0.14 2.93 8.06 -52.49 -0.42 2.51 14 22 H 0.13 1.86 8.06 -52.49 -0.42 1.43 14 23 H 0.16 1.79 8.06 -52.49 -0.42 1.37 14 24 H 0.12 2.71 7.77 -52.49 -0.41 2.31 14 LS Contribution 234.81 15.07 3.54 3.54 Total: -1.00 -29.19 234.81 -7.22 -36.42 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -1.57 Total: 8.68 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -2.44 Total: -17.78 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.43 Total: -44.08 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.02 Total: 12.25 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.16 Total: 0.97 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.19 -7.22 -36.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259291198.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.360 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds