Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38199 * 118.84228 * 2 1 4 4 C 1.41121 * 118.55233 * 180.02562 * 3 2 1 5 5 C 1.40942 * 121.21301 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99569 * 203.80493 * 5 4 3 7 7 C 1.40153 * 120.00785 * 23.80944 * 5 4 3 8 8 N 1.30703 * 119.99326 * 14.11142 * 7 5 4 9 9 Si 1.86797 * 120.00247 * 194.11850 * 7 5 4 10 10 H 1.48500 * 109.46959 * 59.99307 * 9 7 5 11 11 H 1.48494 * 109.47002 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46846 * 299.99593 * 9 7 5 13 13 C 1.41119 * 117.56172 * 359.97438 * 4 3 2 14 14 S 1.76442 * 133.98709 * 180.02562 * 13 4 3 15 15 N 1.69618 * 95.39949 * 179.97438 * 14 13 4 16 16 C 1.28876 * 108.38044 * 0.02562 * 15 14 13 17 17 C 1.40614 * 120.56425 * 0.02562 * 13 4 3 18 18 N 1.31093 * 118.84435 * 180.02562 * 2 1 3 19 19 H 1.09000 * 109.47377 * 269.97510 * 1 2 3 20 20 H 1.09003 * 109.47473 * 29.97502 * 1 2 3 21 21 H 1.09004 * 109.47255 * 149.97312 * 1 2 3 22 22 H 1.08000 * 120.72305 * 0.02897 * 3 2 1 23 23 H 0.97001 * 119.99364 * 180.02562 * 8 7 5 24 24 H 1.07991 * 120.54593 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1736 1.2106 0.0000 4 6 3.5848 1.2034 -0.0006 5 6 4.3213 2.4051 -0.0011 6 1 5.3329 2.4182 -0.3791 7 6 3.7411 3.5831 0.4888 8 7 2.6407 3.5260 1.1918 9 14 4.5402 5.2344 0.1369 10 1 4.6053 5.4500 -1.3310 11 1 3.7364 6.3161 0.7605 12 1 5.9138 5.2497 0.7009 13 6 4.2315 -0.0509 -0.0005 14 16 5.9213 -0.5584 -0.0005 15 7 5.5885 -2.2216 0.0003 16 6 4.3095 -2.3801 0.0000 17 6 3.4829 -1.2413 -0.0005 18 7 2.1394 -1.1483 -0.0005 19 1 -0.3634 -0.0004 1.0276 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3634 -0.8898 -0.5143 22 1 1.6266 2.1417 0.0005 23 1 2.2389 4.3413 1.5306 24 1 3.8792 -3.3706 0.0000 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259458287.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = 23.028180 kcal Electronic energy + Delta-G solvation = -12196.874228 eV Core-core repulsion = 10007.043378 eV Total energy + Delta-G solvation = -2189.830850 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.84143 -37.89347 -36.15301 -33.18854 -32.23219 -28.37737 -27.82696 -25.59119 -23.04952 -21.87987 -19.64980 -18.25723 -17.36518 -17.04940 -16.50062 -15.65060 -15.44547 -14.64030 -14.29777 -14.20645 -13.44793 -13.38503 -13.06131 -12.92714 -12.60093 -12.45051 -12.11604 -11.94894 -11.54125 -11.45420 -10.70500 -10.00908 -9.56677 -9.00008 -8.81853 -6.70435 -0.29835 0.62537 0.72503 1.10126 1.29055 1.37905 1.49780 1.63922 2.13058 2.62701 3.33737 3.38703 3.99458 4.31389 4.56053 4.73013 4.78309 4.92875 4.96560 5.08819 5.19708 5.35728 5.55538 5.66145 5.92119 6.28400 6.54550 6.57725 7.43603 8.08733 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.026895 B = 0.012494 C = 0.008719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.833101 B = 2240.573389 C = 3210.495712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.131 3.869 3 C -0.229 4.229 4 C 0.132 3.868 5 C -0.462 4.462 6 H 0.083 0.917 7 C 0.042 3.958 8 N -0.792 5.792 9 Si 0.989 3.011 10 H -0.257 1.257 11 H -0.258 1.258 12 H -0.260 1.260 13 C -0.279 4.279 14 S 0.157 5.843 15 N -0.449 5.449 16 C 0.131 3.869 17 C 0.065 3.935 18 N -0.545 5.545 19 H 0.077 0.923 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.137 0.863 23 H 0.301 0.699 24 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 0.525 -1.303 1.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.009 4.009 3 C -0.257 4.257 4 C 0.122 3.878 5 C -0.492 4.492 6 H 0.101 0.899 7 C -0.178 4.178 8 N -0.416 5.416 9 Si 0.808 3.192 10 H -0.181 1.181 11 H -0.182 1.182 12 H -0.184 1.184 13 C -0.406 4.406 14 S 0.306 5.694 15 N -0.262 5.262 16 C -0.079 4.079 17 C -0.072 4.072 18 N -0.264 5.264 19 H 0.095 0.905 20 H 0.098 0.902 21 H 0.095 0.905 22 H 0.155 0.845 23 H 0.112 0.888 24 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.254 -0.284 -1.156 1.218 hybrid contribution -0.956 1.343 0.050 1.649 sum -0.702 1.059 -1.106 1.684 Atomic orbital electron populations 1.20599 0.87328 1.03194 1.02954 1.21300 0.97732 0.87901 0.93977 1.22235 0.93576 0.98428 1.11418 1.17271 0.92903 0.89859 0.87800 1.19830 1.00949 0.92894 1.35551 0.89855 1.26866 0.94890 1.04774 0.91279 1.69720 1.17087 1.33287 1.21504 0.85124 0.79221 0.74702 0.80131 1.18065 1.18210 1.18394 1.24584 0.97920 0.99295 1.18756 1.84084 1.07714 0.99564 1.78048 1.76114 1.17421 1.11098 1.21612 1.22622 0.88275 1.00383 0.96636 1.20282 0.92278 0.91239 1.03417 1.67127 1.06515 1.29069 1.23656 0.90471 0.90197 0.90473 0.84515 0.88761 0.77065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.83 10.12 71.24 0.72 -2.10 14 2 C 0.13 5.94 6.76 42.66 0.29 6.23 14 3 C -0.23 -11.35 8.42 22.97 0.19 -11.15 14 4 C 0.13 6.95 5.60 -21.20 -0.12 6.83 14 5 C -0.46 -23.33 9.08 23.40 0.21 -23.12 14 6 H 0.08 4.10 7.89 -2.91 -0.02 4.08 14 7 C 0.04 1.92 5.26 85.33 0.45 2.37 14 8 N -0.79 -36.84 10.77 21.86 0.24 -36.60 14 9 Si 0.99 34.28 29.58 68.60 2.03 36.31 14 10 H -0.26 -8.74 7.11 99.48 0.71 -8.04 14 11 H -0.26 -8.25 7.11 99.48 0.71 -7.55 14 12 H -0.26 -8.93 7.11 99.48 0.71 -8.22 14 13 C -0.28 -14.05 6.54 23.56 0.15 -13.90 14 14 S 0.16 6.94 23.86 -56.49 -1.35 5.59 14 15 N -0.45 -18.52 11.96 -59.66 -0.71 -19.24 14 16 C 0.13 5.25 11.22 85.73 0.96 6.21 14 17 C 0.06 3.07 7.07 39.89 0.28 3.35 14 18 N -0.54 -25.47 10.26 -177.71 -1.82 -27.30 14 19 H 0.08 2.43 8.14 -2.39 -0.02 2.41 14 20 H 0.08 2.43 8.06 -2.39 -0.02 2.41 14 21 H 0.08 2.37 8.14 -2.38 -0.02 2.35 14 22 H 0.14 6.73 6.12 -2.91 -0.02 6.71 14 23 H 0.30 12.35 8.29 -92.71 -0.77 11.58 14 24 H 0.21 6.63 8.06 -2.92 -0.02 6.61 14 Total: -1.00 -56.94 232.53 2.75 -54.19 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.23 Total: 12.34 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 3.14 Total: -25.30 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.30 Total: -83.14 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 2.03 Total: 36.31 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -1.35 Total: 5.59 kcal Total: -56.94 2.75 -54.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259458287.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.221 kcal (2) G-P(sol) polarization free energy of solvation -56.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds