Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36419 * 126.55868 * 2 1 4 4 C 1.36212 * 107.19570 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.68917 * 180.02562 * 4 3 2 6 6 F 1.39909 * 109.47079 * 90.00586 * 5 4 3 7 7 F 1.39898 * 109.47726 * 210.00661 * 5 4 3 8 8 F 1.39900 * 109.47758 * 330.01013 * 5 4 3 9 9 N 1.32760 * 108.62260 * 0.02562 * 4 3 2 10 10 C 1.32986 * 109.22141 * 359.75870 * 9 4 3 11 11 C 1.39994 * 125.96053 * 180.23265 * 10 9 4 12 12 H 1.08002 * 119.99430 * 180.17552 * 11 10 9 13 13 C 1.40231 * 120.00115 * 0.17001 * 11 10 9 14 14 N 1.30682 * 120.00153 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00071 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46944 * 90.00167 * 15 13 11 17 17 H 1.48495 * 109.47395 * 210.00643 * 15 13 11 18 18 H 1.48507 * 109.47163 * 330.00461 * 15 13 11 19 19 H 1.09002 * 109.47391 * 90.01835 * 1 2 3 20 20 H 1.09001 * 109.46813 * 330.01892 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.02019 * 1 2 3 22 22 H 1.07999 * 126.39637 * 359.93569 * 3 2 1 23 23 H 0.97005 * 120.00387 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2776 1.0958 0.0000 4 6 3.5626 0.6442 0.0006 5 6 4.7979 1.5074 0.0013 6 9 5.1795 1.7742 1.3207 7 9 5.8348 0.8385 -0.6578 8 9 4.5262 2.7111 -0.6579 9 7 3.5455 -0.6833 0.0004 10 6 2.2842 -1.1049 0.0049 11 6 1.8637 -2.4402 0.0108 12 1 0.8094 -2.6742 0.0114 13 6 2.8115 -3.4737 0.0159 14 7 4.0872 -3.1904 0.0157 15 14 2.2504 -5.2554 0.0245 16 1 2.1019 -5.7343 -1.3734 17 1 3.2580 -6.0884 0.7287 18 1 0.9450 -5.3600 0.7248 19 1 -0.3634 -0.0003 -1.0277 20 1 -0.3633 0.8902 0.5136 21 1 -0.3633 -0.8898 0.5142 22 1 1.9610 2.1283 -0.0010 23 1 4.7429 -3.9054 0.0195 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259512054.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = -99.683635 kcal Electronic energy + Delta-G solvation = -14966.652695 eV Core-core repulsion = 11786.891049 eV Total energy + Delta-G solvation = -3179.761645 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.19633 -46.78939 -46.63221 -40.19677 -33.50992 -32.82903 -29.27968 -26.77319 -26.02994 -23.61333 -20.08995 -19.75221 -17.60186 -17.50087 -17.00325 -16.45395 -14.87041 -14.65763 -14.37035 -13.65406 -13.57963 -13.19012 -13.11373 -12.87570 -12.86740 -12.72047 -12.07932 -11.93518 -11.26954 -11.21796 -11.20124 -10.58266 -10.24504 -9.35088 -8.34551 -8.15005 -7.41594 -6.51821 -4.47740 2.93867 3.10761 3.13636 3.21718 3.58836 3.91639 4.18479 4.28646 4.87577 5.14387 5.27259 5.56132 5.59146 5.88545 6.01371 6.03735 6.70645 7.03983 7.32971 7.71492 7.90823 8.18336 8.78981 9.02453 9.84901 10.40519 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.010443 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.173755 B = 2680.563011 C = 3297.932920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.505 5.505 3 C -0.100 4.100 4 C -0.080 4.080 5 C 0.551 3.449 6 F -0.188 7.188 7 F -0.175 7.175 8 F -0.191 7.191 9 N -0.486 5.486 10 C 0.382 3.618 11 C -0.459 4.459 12 H 0.083 0.917 13 C 0.081 3.919 14 N -0.736 5.736 15 Si 0.915 3.085 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.264 1.264 19 H 0.055 0.945 20 H 0.063 0.937 21 H 0.078 0.922 22 H 0.150 0.850 23 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 4.106 0.041 5.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.193 5.193 3 C -0.235 4.235 4 C -0.214 4.214 5 C 0.496 3.504 6 F -0.170 7.170 7 F -0.156 7.156 8 F -0.172 7.172 9 N -0.207 5.207 10 C 0.140 3.860 11 C -0.499 4.499 12 H 0.101 0.899 13 C -0.144 4.144 14 N -0.360 5.360 15 Si 0.739 3.261 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.188 1.188 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.097 0.903 22 H 0.168 0.832 23 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.974 3.597 0.041 4.667 hybrid contribution -0.784 -0.006 -0.008 0.785 sum -3.759 3.590 0.033 5.198 Atomic orbital electron populations 1.21550 0.79000 1.02632 1.01526 1.45475 1.05694 1.06567 1.61614 1.21473 0.90124 0.91676 1.20232 1.20163 0.89747 0.95062 1.16416 1.17387 0.83132 0.77064 0.72845 1.93137 1.92418 1.94314 1.37116 1.93154 1.61052 1.80404 1.81032 1.93095 1.94068 1.48538 1.81529 1.71113 1.18138 1.04132 1.27298 1.20235 0.82397 0.87808 0.95584 1.18132 0.94368 0.86531 1.50841 0.89876 1.25736 0.94381 1.00861 0.93459 1.69986 1.01057 1.34119 1.30842 0.86220 0.79341 0.81454 0.79041 1.19537 1.20150 1.18814 0.92639 0.91823 0.90339 0.83224 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 10.96 59.85 0.66 2.29 14 2 N -0.51 -11.62 3.21 -123.36 -0.40 -12.01 14 3 C -0.10 -2.26 11.17 -16.24 -0.18 -2.44 14 4 C -0.08 -2.03 6.43 -82.92 -0.53 -2.56 14 5 C 0.55 12.44 3.54 36.00 0.13 12.57 14 6 F -0.19 -4.12 17.30 2.25 0.04 -4.08 14 7 F -0.18 -4.14 17.25 2.25 0.04 -4.11 14 8 F -0.19 -3.81 17.01 2.25 0.04 -3.77 14 9 N -0.49 -14.02 9.34 -8.95 -0.08 -14.10 14 10 C 0.38 10.37 7.43 -155.59 -1.16 9.22 14 11 C -0.46 -12.01 9.00 -38.18 -0.34 -12.35 14 12 H 0.08 1.96 7.15 -52.49 -0.38 1.59 14 13 C 0.08 2.06 5.50 -17.29 -0.10 1.97 14 14 N -0.74 -20.31 11.90 55.56 0.66 -19.65 14 15 Si 0.92 18.58 29.56 -169.99 -5.03 13.55 14 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 14 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 14 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 14 19 H 0.06 0.85 8.14 -51.93 -0.42 0.42 14 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 14 21 H 0.08 1.27 7.37 -51.93 -0.38 0.88 14 22 H 0.15 2.83 8.06 -52.49 -0.42 2.40 14 23 H 0.28 6.93 8.29 -40.82 -0.34 6.59 14 LS Contribution 228.07 15.07 3.44 3.44 Total: -1.00 -30.64 228.07 -3.98 -34.62 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -1.16 Total: -2.58 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.53 Total: 8.69 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.18 Total: -45.76 kcal Atomic # 9 Polarization: -12.07 SS G_CDS: 0.12 Total: -11.96 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.64 -3.98 -34.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259512054.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.063 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds