Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36419 * 126.55868 * 2 1 4 4 C 1.36212 * 107.19570 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.68917 * 180.02562 * 4 3 2 6 6 F 1.39909 * 109.47079 * 90.00586 * 5 4 3 7 7 F 1.39898 * 109.47726 * 210.00661 * 5 4 3 8 8 F 1.39900 * 109.47758 * 330.01013 * 5 4 3 9 9 N 1.32760 * 108.62260 * 0.02562 * 4 3 2 10 10 C 1.32986 * 109.22141 * 359.75870 * 9 4 3 11 11 C 1.39994 * 125.96053 * 180.23265 * 10 9 4 12 12 H 1.08002 * 119.99430 * 180.17552 * 11 10 9 13 13 C 1.40231 * 120.00115 * 0.17001 * 11 10 9 14 14 N 1.30682 * 120.00153 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00071 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46944 * 90.00167 * 15 13 11 17 17 H 1.48495 * 109.47395 * 210.00643 * 15 13 11 18 18 H 1.48507 * 109.47163 * 330.00461 * 15 13 11 19 19 H 1.09002 * 109.47391 * 90.01835 * 1 2 3 20 20 H 1.09001 * 109.46813 * 330.01892 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.02019 * 1 2 3 22 22 H 1.07999 * 126.39637 * 359.93569 * 3 2 1 23 23 H 0.97005 * 120.00387 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2776 1.0958 0.0000 4 6 3.5626 0.6442 0.0006 5 6 4.7979 1.5074 0.0013 6 9 5.1795 1.7742 1.3207 7 9 5.8348 0.8385 -0.6578 8 9 4.5262 2.7111 -0.6579 9 7 3.5455 -0.6833 0.0004 10 6 2.2842 -1.1049 0.0049 11 6 1.8637 -2.4402 0.0108 12 1 0.8094 -2.6742 0.0114 13 6 2.8115 -3.4737 0.0159 14 7 4.0872 -3.1904 0.0157 15 14 2.2504 -5.2554 0.0245 16 1 2.1019 -5.7343 -1.3734 17 1 3.2580 -6.0884 0.7287 18 1 0.9450 -5.3600 0.7248 19 1 -0.3634 -0.0003 -1.0277 20 1 -0.3633 0.8902 0.5136 21 1 -0.3633 -0.8898 0.5142 22 1 1.9610 2.1283 -0.0010 23 1 4.7429 -3.9054 0.0195 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259512054.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = -118.744812 kcal Electronic energy + Delta-G solvation = -14967.479249 eV Core-core repulsion = 11786.891049 eV Total energy + Delta-G solvation = -3180.588200 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.95590 -48.50057 -48.44399 -42.04149 -35.38826 -34.55320 -31.17165 -28.47166 -27.79920 -25.37930 -21.96955 -21.53717 -19.36008 -19.30198 -18.76903 -18.33555 -16.64698 -16.32778 -16.03435 -15.36261 -15.34530 -14.93792 -14.78572 -14.65982 -14.64014 -14.55100 -13.57083 -13.50769 -13.00085 -12.88420 -12.81712 -12.40533 -11.89496 -11.17164 -10.15388 -10.06933 -9.33400 -8.38472 -6.42389 1.22255 1.45786 1.55041 1.60899 1.81905 2.23612 2.39282 2.51146 3.08190 3.38636 3.40832 3.76462 4.27544 4.36384 4.59299 4.76742 4.86557 5.18695 5.47073 5.87315 6.12471 6.31207 6.89204 7.17069 7.96671 8.57156 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.010443 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.173755 B = 2680.563011 C = 3297.932920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.505 5.505 3 C -0.070 4.070 4 C -0.128 4.128 5 C 0.559 3.441 6 F -0.186 7.186 7 F -0.186 7.186 8 F -0.173 7.173 9 N -0.535 5.535 10 C 0.347 3.653 11 C -0.485 4.485 12 H 0.101 0.899 13 C 0.031 3.969 14 N -0.790 5.790 15 Si 0.997 3.003 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.249 1.249 19 H 0.074 0.926 20 H 0.099 0.901 21 H 0.082 0.918 22 H 0.193 0.807 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 4.368 0.062 7.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.192 5.192 3 C -0.207 4.207 4 C -0.261 4.261 5 C 0.503 3.497 6 F -0.167 7.167 7 F -0.168 7.168 8 F -0.154 7.154 9 N -0.257 5.257 10 C 0.102 3.898 11 C -0.524 4.524 12 H 0.119 0.881 13 C -0.189 4.189 14 N -0.416 5.416 15 Si 0.818 3.182 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.172 1.172 19 H 0.092 0.908 20 H 0.118 0.882 21 H 0.101 0.899 22 H 0.210 0.790 23 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.961 3.895 0.061 6.308 hybrid contribution -0.253 0.087 -0.020 0.269 sum -5.215 3.982 0.041 6.562 Atomic orbital electron populations 1.21949 0.75396 1.04696 1.03380 1.45830 1.07970 1.05522 1.59855 1.22179 0.89284 0.93295 1.15893 1.20642 0.91801 0.94640 1.18985 1.17133 0.82253 0.77290 0.72975 1.93135 1.92346 1.94278 1.36985 1.93126 1.61494 1.80867 1.81296 1.93120 1.93901 1.47251 1.81170 1.70977 1.20007 1.06185 1.28539 1.20584 0.82995 0.89256 0.96916 1.18615 0.95470 0.86833 1.51501 0.88106 1.26827 0.94108 1.05746 0.92201 1.70144 1.02683 1.35754 1.33009 0.84989 0.79185 0.74862 0.79214 1.18947 1.20117 1.17215 0.90782 0.88233 0.89910 0.78963 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.64 10.96 127.77 1.40 4.04 14 2 N -0.51 -22.26 3.21 -544.21 -1.75 -24.00 14 3 C -0.07 -3.00 11.17 83.51 0.93 -2.06 14 4 C -0.13 -6.47 6.43 41.95 0.27 -6.21 14 5 C 0.56 25.02 3.54 71.24 0.25 25.28 14 6 F -0.19 -8.06 17.30 44.97 0.78 -7.28 14 7 F -0.19 -8.96 17.25 44.97 0.78 -8.18 14 8 F -0.17 -6.62 17.01 44.97 0.76 -5.86 14 9 N -0.54 -31.43 9.34 -182.22 -1.70 -33.13 14 10 C 0.35 18.88 7.43 133.59 0.99 19.87 14 11 C -0.48 -25.34 9.00 23.18 0.21 -25.14 14 12 H 0.10 4.66 7.15 -2.91 -0.02 4.64 14 13 C 0.03 1.60 5.50 85.35 0.47 2.07 14 14 N -0.79 -44.93 11.90 21.88 0.26 -44.67 14 15 Si 1.00 38.03 29.56 68.60 2.03 40.06 14 16 H -0.26 -9.75 7.11 99.48 0.71 -9.04 14 17 H -0.28 -10.37 7.11 99.48 0.71 -9.66 14 18 H -0.25 -8.76 7.11 99.48 0.71 -8.05 14 19 H 0.07 1.99 8.14 -2.39 -0.02 1.97 14 20 H 0.10 2.30 8.14 -2.39 -0.02 2.28 14 21 H 0.08 2.44 7.37 -2.38 -0.02 2.43 14 22 H 0.19 6.42 8.06 -2.91 -0.02 6.39 14 23 H 0.28 14.46 8.29 -92.70 -0.77 13.69 14 Total: -1.00 -67.50 228.07 6.94 -60.57 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.25 Total: 4.65 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 4.53 Total: 17.85 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -3.19 Total: -101.81 kcal Atomic # 9 Polarization: -23.64 SS G_CDS: 2.32 Total: -21.32 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -67.50 6.94 -60.57 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259512054.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.176 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds