Wall clock time and date at job start Mon Mar 30 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99786 * 2 1 4 4 H 1.48502 * 109.47094 * 240.00016 * 3 2 1 5 5 H 1.48496 * 109.47373 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47299 * 120.00224 * 3 2 1 7 7 C 1.37871 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00569 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99841 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.38608 * 60.20461 * 9 7 2 11 11 C 1.52589 * 109.29696 * 300.46893 * 9 7 2 12 12 C 1.52587 * 110.64209 * 169.91005 * 11 9 7 13 13 C 1.53036 * 109.98462 * 69.98781 * 12 11 9 14 14 S 1.81668 * 108.99873 * 296.35087 * 13 12 11 15 15 O 1.42097 * 108.66427 * 168.63105 * 14 13 12 16 16 O 1.42102 * 108.66490 * 299.87458 * 14 13 12 17 17 C 1.53040 * 109.38441 * 179.97438 * 9 7 2 18 18 H 0.97000 * 120.00456 * 0.02562 * 1 2 3 19 19 H 0.96696 * 114.00197 * 299.79229 * 10 9 7 20 20 H 1.09006 * 109.24438 * 49.60894 * 11 9 7 21 21 H 1.09000 * 109.24609 * 290.21297 * 11 9 7 22 22 H 1.09002 * 109.38626 * 309.82827 * 12 11 9 23 23 H 1.09005 * 109.38240 * 190.14623 * 12 11 9 24 24 H 1.09002 * 109.55030 * 56.20875 * 13 12 11 25 25 H 1.09006 * 109.54664 * 176.39953 * 13 12 11 26 26 H 1.08997 * 109.54734 * 63.84094 * 17 9 7 27 27 H 1.08994 * 109.62873 * 303.59979 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4343 -2.5753 -1.1695 11 6 0.3660 -2.5705 1.2415 12 6 -0.5919 -3.7548 1.1517 13 6 0.1840 -5.0667 1.2900 14 16 1.3312 -5.2257 -0.1096 15 8 2.2266 -6.2966 0.1558 16 8 0.5795 -5.2304 -1.3155 17 6 2.2473 -3.6609 0.0005 18 1 -0.4851 0.8400 -0.0004 19 1 -0.2225 -1.8689 -1.2374 20 1 -0.2095 -1.6486 1.3258 21 1 0.9944 -2.6829 2.1250 22 1 -1.1015 -3.7357 0.1884 23 1 -1.3297 -3.6848 1.9510 24 1 0.7463 -5.0612 2.2238 25 1 -0.5133 -5.9046 1.2890 26 1 2.8285 -3.6429 0.9225 27 1 2.9169 -3.5689 -0.8546 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259550848.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:16 Heat of formation + Delta-G solvation = -127.090934 kcal Electronic energy + Delta-G solvation = -14207.038323 eV Core-core repulsion = 11671.096149 eV Total energy + Delta-G solvation = -2535.942174 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.67916 -36.18488 -35.30290 -33.35894 -32.26565 -30.19821 -26.73671 -25.52051 -21.94427 -19.76736 -18.11924 -17.30935 -16.00188 -15.36293 -15.26407 -14.98537 -14.42853 -14.01203 -13.28881 -12.94174 -12.45869 -12.12361 -11.78869 -11.49360 -11.29684 -11.22276 -11.17799 -10.77458 -10.61800 -10.48457 -10.22226 -10.04762 -9.64178 -9.35979 -8.69147 -8.22524 -6.31774 -4.44359 0.74796 3.16927 3.22687 3.24941 3.36437 4.20664 4.28681 4.65744 4.91631 5.18461 5.28780 5.47507 5.70960 5.76823 6.03766 6.10664 6.26315 6.40016 6.73360 6.87106 7.26744 7.47658 7.77509 7.94276 8.57241 9.23322 9.37135 10.70912 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.052809 B = 0.010710 C = 0.010130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.088233 B = 2613.778804 C = 2763.368441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.263 3.737 10 O -0.577 6.577 11 C -0.163 4.163 12 C -0.105 4.105 13 C -0.602 4.602 14 S 2.409 3.591 15 O -0.976 6.976 16 O -0.925 6.925 17 C -0.564 4.564 18 H 0.271 0.729 19 H 0.388 0.612 20 H 0.118 0.882 21 H 0.050 0.950 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -4.138 3.741 5.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.222 3.778 10 O -0.387 6.387 11 C -0.201 4.201 12 C -0.143 4.143 13 C -0.731 4.731 14 S 2.594 3.406 15 O -0.973 6.973 16 O -0.922 6.922 17 C -0.696 4.696 18 H 0.081 0.919 19 H 0.239 0.761 20 H 0.136 0.864 21 H 0.069 0.931 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.139 0.861 25 H 0.136 0.864 26 H 0.144 0.856 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.119 -5.285 3.021 6.088 hybrid contribution 0.145 1.983 0.885 2.176 sum 0.026 -3.302 3.906 5.114 Atomic orbital electron populations 1.69523 1.05897 1.27865 1.50467 1.25005 0.95098 0.99595 0.93567 0.86445 0.79533 0.81997 0.78828 1.20004 1.21024 1.20132 1.21599 0.93788 0.90242 1.51440 0.91856 1.18098 0.85934 0.90252 0.83528 1.86252 1.52687 1.55234 1.44550 1.22438 0.98817 0.99719 0.99091 1.21268 0.98690 0.90654 1.03708 1.30212 1.15852 1.07120 1.19910 1.08102 0.77519 0.77581 0.77424 1.93505 1.64603 1.52673 1.86491 1.93560 1.70834 1.86566 1.41272 1.30064 1.11797 1.17336 1.10380 0.91896 0.76093 0.86417 0.93105 0.89606 0.91664 0.86116 0.86397 0.85618 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.22 9.62 55.43 0.53 -21.68 15 2 C 0.07 1.72 5.17 -17.82 -0.09 1.62 15 3 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.53 -13.32 8.24 -34.44 -0.28 -13.60 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.26 5.95 0.66 -91.96 -0.06 5.89 15 10 O -0.58 -14.03 10.14 -53.58 -0.54 -14.57 15 11 C -0.16 -3.32 4.57 -27.15 -0.12 -3.44 15 12 C -0.10 -1.83 5.63 -26.92 -0.15 -1.99 15 13 C -0.60 -9.25 6.35 37.18 0.24 -9.01 15 14 S 2.41 44.23 5.24 -107.50 -0.56 43.67 15 15 O -0.98 -19.46 18.10 -57.82 -1.05 -20.51 15 16 O -0.93 -20.32 16.62 -65.28 -1.08 -21.41 15 17 C -0.56 -10.96 5.32 37.18 0.20 -10.76 15 18 H 0.27 6.46 8.31 -40.82 -0.34 6.12 15 19 H 0.39 9.55 7.15 45.56 0.33 9.87 15 20 H 0.12 2.67 5.77 -51.93 -0.30 2.37 15 21 H 0.05 0.95 8.09 -51.93 -0.42 0.53 15 22 H 0.09 1.61 7.13 -51.93 -0.37 1.24 15 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 24 H 0.12 1.57 8.14 -51.93 -0.42 1.15 15 25 H 0.12 1.55 8.14 -51.92 -0.42 1.12 15 26 H 0.13 2.09 8.14 -51.93 -0.42 1.67 15 27 H 0.13 2.45 8.14 -51.93 -0.42 2.03 15 LS Contribution 231.42 15.07 3.49 3.49 Total: -1.00 -29.82 231.42 -6.94 -36.76 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -2.42 Total: 10.88 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: -0.28 Total: -31.28 kcal Atomic # 7 Polarization: -22.22 SS G_CDS: 0.53 Total: -21.68 kcal Atomic # 8 Polarization: -53.82 SS G_CDS: -2.67 Total: -56.49 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 44.23 SS G_CDS: -0.56 Total: 43.67 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.82 -6.94 -36.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550848.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.336 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds