Wall clock time and date at job start Mon Mar 30 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99786 * 2 1 4 4 H 1.48502 * 109.47094 * 240.00016 * 3 2 1 5 5 H 1.48496 * 109.47373 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47299 * 120.00224 * 3 2 1 7 7 C 1.37871 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00569 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99841 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.38608 * 60.20461 * 9 7 2 11 11 C 1.52589 * 109.29696 * 300.46893 * 9 7 2 12 12 C 1.52587 * 110.64209 * 169.91005 * 11 9 7 13 13 C 1.53036 * 109.98462 * 69.98781 * 12 11 9 14 14 S 1.81668 * 108.99873 * 296.35087 * 13 12 11 15 15 O 1.42097 * 108.66427 * 168.63105 * 14 13 12 16 16 O 1.42102 * 108.66490 * 299.87458 * 14 13 12 17 17 C 1.53040 * 109.38441 * 179.97438 * 9 7 2 18 18 H 0.97000 * 120.00456 * 0.02562 * 1 2 3 19 19 H 0.96696 * 114.00197 * 299.79229 * 10 9 7 20 20 H 1.09006 * 109.24438 * 49.60894 * 11 9 7 21 21 H 1.09000 * 109.24609 * 290.21297 * 11 9 7 22 22 H 1.09002 * 109.38626 * 309.82827 * 12 11 9 23 23 H 1.09005 * 109.38240 * 190.14623 * 12 11 9 24 24 H 1.09002 * 109.55030 * 56.20875 * 13 12 11 25 25 H 1.09006 * 109.54664 * 176.39953 * 13 12 11 26 26 H 1.08997 * 109.54734 * 63.84094 * 17 9 7 27 27 H 1.08994 * 109.62873 * 303.59979 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4343 -2.5753 -1.1695 11 6 0.3660 -2.5705 1.2415 12 6 -0.5919 -3.7548 1.1517 13 6 0.1840 -5.0667 1.2900 14 16 1.3312 -5.2257 -0.1096 15 8 2.2266 -6.2966 0.1558 16 8 0.5795 -5.2304 -1.3155 17 6 2.2473 -3.6609 0.0005 18 1 -0.4851 0.8400 -0.0004 19 1 -0.2225 -1.8689 -1.2374 20 1 -0.2095 -1.6486 1.3258 21 1 0.9944 -2.6829 2.1250 22 1 -1.1015 -3.7357 0.1884 23 1 -1.3297 -3.6848 1.9510 24 1 0.7463 -5.0612 2.2238 25 1 -0.5133 -5.9046 1.2890 26 1 2.8285 -3.6429 0.9225 27 1 2.9169 -3.5689 -0.8546 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259550848.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:16 Heat of formation + Delta-G solvation = -150.087518 kcal Electronic energy + Delta-G solvation = -14208.035530 eV Core-core repulsion = 11671.096149 eV Total energy + Delta-G solvation = -2536.939381 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.34678 -37.74262 -36.86944 -34.91606 -34.14915 -31.81736 -28.23464 -27.28608 -23.47225 -21.40168 -19.64923 -19.05756 -17.48530 -17.08279 -16.91075 -16.51267 -16.12329 -15.55774 -14.94953 -14.43532 -13.85653 -13.70089 -13.47492 -13.08986 -12.93638 -12.87933 -12.82666 -12.38538 -12.32937 -12.15038 -11.87704 -11.63069 -11.09865 -11.01336 -10.55225 -10.00486 -8.17490 -6.36662 -0.69640 1.42790 1.45840 1.51675 1.93632 2.40219 2.85411 3.03019 3.25111 3.80474 3.93141 3.98787 4.24707 4.38019 4.55568 4.70477 4.83137 4.95268 5.21595 5.31225 5.57567 5.71497 6.02914 6.15518 6.66667 7.33633 7.47252 8.82333 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.052809 B = 0.010710 C = 0.010130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.088233 B = 2613.778804 C = 2763.368441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.032 3.968 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.055 0.945 9 C 0.247 3.753 10 O -0.589 6.589 11 C -0.160 4.160 12 C -0.104 4.104 13 C -0.579 4.579 14 S 2.422 3.578 15 O -0.992 6.992 16 O -0.968 6.968 17 C -0.575 4.575 18 H 0.271 0.729 19 H 0.381 0.619 20 H 0.093 0.907 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.095 0.905 24 H 0.157 0.843 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -4.670 5.372 7.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.168 4.168 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.597 4.597 8 H 0.074 0.926 9 C 0.207 3.793 10 O -0.398 6.398 11 C -0.198 4.198 12 C -0.142 4.142 13 C -0.711 4.711 14 S 2.609 3.391 15 O -0.989 6.989 16 O -0.965 6.965 17 C -0.706 4.706 18 H 0.081 0.919 19 H 0.231 0.769 20 H 0.111 0.889 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.113 0.887 24 H 0.175 0.825 25 H 0.170 0.830 26 H 0.170 0.830 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.283 -5.819 4.626 7.439 hybrid contribution 0.195 2.153 0.402 2.199 sum -0.088 -3.666 5.028 6.223 Atomic orbital electron populations 1.69615 1.06463 1.28281 1.50322 1.25597 0.95871 1.01916 0.93464 0.85651 0.78491 0.79192 0.78477 1.20704 1.20627 1.19601 1.21927 0.93777 0.91948 1.52074 0.92633 1.18355 0.86528 0.90533 0.83904 1.86259 1.52737 1.54843 1.45957 1.22300 0.98985 1.00089 0.98460 1.21214 0.98690 0.90359 1.03972 1.30017 1.15200 1.07162 1.18750 1.07570 0.77293 0.76382 0.77822 1.93480 1.65682 1.52831 1.86896 1.93507 1.71550 1.86819 1.44656 1.30126 1.11635 1.17292 1.11498 0.91889 0.76911 0.88878 0.91356 0.91355 0.88666 0.82538 0.83022 0.82994 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.96 9.62 21.44 0.21 -44.76 15 2 C 0.03 1.59 5.17 84.65 0.44 2.03 15 3 Si 0.96 40.21 29.54 68.60 2.03 42.24 15 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.28 -11.55 7.11 99.48 0.71 -10.85 15 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.56 -28.01 8.24 25.60 0.21 -27.80 15 8 H 0.06 2.78 7.74 -2.91 -0.02 2.75 15 9 C 0.25 11.10 0.66 -11.66 -0.01 11.09 15 10 O -0.59 -29.03 10.14 -131.43 -1.33 -30.36 15 11 C -0.16 -6.26 4.57 30.32 0.14 -6.12 15 12 C -0.10 -3.32 5.63 30.47 0.17 -3.15 15 13 C -0.58 -15.29 6.35 71.99 0.46 -14.83 15 14 S 2.42 84.80 5.24 -56.49 -0.30 84.51 15 15 O -0.99 -37.63 18.10 -127.38 -2.31 -39.94 15 16 O -0.97 -42.21 16.62 -120.25 -2.00 -44.21 15 17 C -0.58 -21.85 5.32 72.00 0.38 -21.46 15 18 H 0.27 12.91 8.31 -92.71 -0.77 12.14 15 19 H 0.38 19.24 7.15 -74.06 -0.53 18.71 15 20 H 0.09 4.14 5.77 -2.38 -0.01 4.13 15 21 H 0.07 2.37 8.09 -2.39 -0.02 2.35 15 22 H 0.07 2.45 7.13 -2.39 -0.02 2.43 15 23 H 0.09 2.53 8.14 -2.38 -0.02 2.51 15 24 H 0.16 3.15 8.14 -2.39 -0.02 3.14 15 25 H 0.15 3.16 8.14 -2.38 -0.02 3.14 15 26 H 0.15 4.78 8.14 -2.39 -0.02 4.76 15 27 H 0.12 4.60 8.14 -2.39 -0.02 4.58 15 Total: -1.00 -63.45 231.42 -1.26 -64.71 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.65 Total: 28.07 kcal Atomic # 6 Polarization: -62.05 SS G_CDS: 1.79 Total: -60.26 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.21 Total: -44.76 kcal Atomic # 8 Polarization: -108.87 SS G_CDS: -5.64 Total: -114.51 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: 84.80 SS G_CDS: -0.30 Total: 84.51 kcal Total: -63.45 -1.26 -64.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550848.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.382 kcal (2) G-P(sol) polarization free energy of solvation -63.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds