Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47405 * 90.00028 * 3 2 1 5 5 H 1.48504 * 109.46994 * 209.99929 * 3 2 1 6 6 H 1.48497 * 109.47709 * 329.99750 * 3 2 1 7 7 C 1.37873 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00041 * 181.20236 * 7 2 1 9 9 C 1.50699 * 120.00007 * 1.18784 * 7 2 1 10 10 O 1.42898 * 109.38167 * 55.04616 * 9 7 2 11 11 C 1.52592 * 109.38617 * 174.83050 * 9 7 2 12 12 C 1.52590 * 110.64520 * 190.14497 * 11 9 7 13 13 C 1.53034 * 109.98813 * 290.02148 * 12 11 9 14 14 S 1.81670 * 109.00269 * 63.64476 * 13 12 11 15 15 O 1.42100 * 108.66110 * 60.03179 * 14 13 12 16 16 O 1.42099 * 108.66238 * 191.27681 * 14 13 12 17 17 C 1.53037 * 109.38858 * 295.35963 * 9 7 2 18 18 H 0.96997 * 120.00846 * 185.84596 * 1 2 3 19 19 H 0.96705 * 114.00344 * 292.54413 * 10 9 7 20 20 H 1.08997 * 109.24478 * 310.45247 * 11 9 7 21 21 H 1.09001 * 109.23510 * 69.88960 * 11 9 7 22 22 H 1.09006 * 109.37983 * 50.17488 * 12 11 9 23 23 H 1.08993 * 109.38524 * 169.85556 * 12 11 9 24 24 H 1.08998 * 109.54974 * 183.50621 * 13 12 11 25 25 H 1.09008 * 109.54713 * 303.69150 * 13 12 11 26 26 H 1.08994 * 109.54872 * 296.04834 * 17 9 7 27 27 H 1.08995 * 109.54772 * 56.34293 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0842 -1.1942 0.0191 9 6 1.2512 -2.4990 -0.0282 10 8 0.3652 -2.5114 -1.1493 11 6 2.2417 -3.6530 -0.1526 12 6 1.5099 -4.9621 -0.4341 13 6 0.7280 -5.4014 0.8059 14 16 -0.5520 -4.1640 1.1673 15 8 -1.4234 -4.0711 0.0487 16 8 -1.0959 -4.4342 2.4519 17 6 0.4384 -2.6438 1.2604 18 1 -0.4851 -0.8356 0.0856 19 1 -0.3605 -1.8756 -1.0843 20 1 2.9341 -3.4458 -0.9685 21 1 2.8012 -3.7479 0.7780 22 1 0.8193 -4.8189 -1.2653 23 1 2.2347 -5.7325 -0.6966 24 1 0.2590 -6.3673 0.6181 25 1 1.4069 -5.4846 1.6546 26 1 1.1144 -2.7006 2.1135 27 1 -0.2224 -1.7844 1.3733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259550850.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = -146.340180 kcal Electronic energy + Delta-G solvation = -14327.020489 eV Core-core repulsion = 11790.243605 eV Total energy + Delta-G solvation = -2536.776884 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80055 -37.86967 -37.00171 -35.61309 -34.15631 -31.40343 -28.81246 -27.04559 -23.61978 -21.46197 -20.29826 -19.57289 -17.59497 -17.24820 -16.94275 -16.34062 -16.12556 -15.70400 -15.32541 -14.78284 -14.12052 -13.70341 -13.53512 -13.21846 -13.12003 -12.99057 -12.58630 -12.46006 -12.19554 -11.98192 -11.93620 -11.84672 -11.63338 -11.00510 -10.62019 -10.02590 -8.60605 -6.50123 -0.81840 1.54021 1.59396 1.78136 1.82378 2.52274 2.75101 2.92091 3.17601 3.69187 3.79501 3.86658 3.95128 4.07551 4.38370 4.48692 4.65002 4.85628 4.95969 5.06146 5.35582 5.47447 5.83521 6.09489 6.43264 6.96500 7.30773 8.64289 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.045203 B = 0.011892 C = 0.010820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.278458 B = 2353.966584 C = 2587.202526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.020 4.020 3 Si 1.115 2.885 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.288 1.288 7 C -0.615 4.615 8 H 0.064 0.936 9 C 0.229 3.771 10 O -0.584 6.584 11 C -0.111 4.111 12 C -0.107 4.107 13 C -0.573 4.573 14 S 2.406 3.594 15 O -0.974 6.974 16 O -0.994 6.994 17 C -0.624 4.624 18 H 0.262 0.738 19 H 0.366 0.634 20 H 0.074 0.926 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.115 0.885 24 H 0.157 0.843 25 H 0.163 0.837 26 H 0.145 0.855 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -8.512 2.169 10.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.219 4.219 3 Si 0.937 3.063 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.214 1.214 7 C -0.655 4.655 8 H 0.082 0.918 9 C 0.189 3.811 10 O -0.393 6.393 11 C -0.148 4.148 12 C -0.145 4.145 13 C -0.706 4.706 14 S 2.595 3.405 15 O -0.971 6.971 16 O -0.991 6.991 17 C -0.755 4.755 18 H 0.077 0.923 19 H 0.217 0.783 20 H 0.093 0.907 21 H 0.114 0.886 22 H 0.089 0.911 23 H 0.133 0.867 24 H 0.175 0.825 25 H 0.181 0.819 26 H 0.163 0.837 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.604 -7.512 2.022 9.040 hybrid contribution 0.153 -0.670 0.316 0.756 sum 4.757 -8.181 2.338 9.748 Atomic orbital electron populations 1.71089 1.07923 1.30596 1.48384 1.27192 0.96486 1.06559 0.91642 0.82941 0.74273 0.71463 0.77581 1.19917 1.19547 1.21386 1.22826 0.95379 0.92849 1.54404 0.91801 1.18784 0.86772 0.96176 0.79400 1.86354 1.43102 1.63706 1.46110 1.21605 0.97498 0.91751 1.03953 1.21246 1.00359 0.97806 0.95068 1.29966 1.16022 1.15538 1.09052 1.08081 0.78836 0.80077 0.73520 1.93493 1.63735 1.86350 1.53555 1.93472 1.78246 1.84914 1.42503 1.31102 1.14787 1.19351 1.10286 0.92269 0.78342 0.90714 0.88567 0.91087 0.86702 0.82533 0.81942 0.83685 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.91 12.57 21.45 0.27 -52.64 15 2 C -0.02 -1.08 5.23 84.65 0.44 -0.63 15 3 Si 1.12 47.20 29.90 68.60 2.05 49.25 15 4 H -0.27 -10.91 7.11 99.48 0.71 -10.21 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 6 H -0.29 -12.44 7.11 99.48 0.71 -11.73 15 7 C -0.62 -31.20 8.18 25.60 0.21 -30.99 15 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 15 9 C 0.23 10.21 0.65 -11.66 -0.01 10.20 15 10 O -0.58 -28.91 10.06 -131.29 -1.32 -30.23 15 11 C -0.11 -3.76 4.68 30.32 0.14 -3.62 15 12 C -0.11 -2.95 5.63 30.47 0.17 -2.77 15 13 C -0.57 -13.95 6.35 71.99 0.46 -13.50 15 14 S 2.41 86.87 5.24 -56.49 -0.30 86.57 15 15 O -0.97 -42.81 16.60 -120.20 -1.99 -44.80 15 16 O -0.99 -39.94 18.11 -127.38 -2.31 -42.25 15 17 C -0.62 -25.64 5.01 71.99 0.36 -25.28 15 18 H 0.26 14.54 3.49 -92.71 -0.32 14.22 15 19 H 0.37 19.48 6.05 -74.05 -0.45 19.03 15 20 H 0.07 2.60 8.09 -2.39 -0.02 2.58 15 21 H 0.10 2.71 8.09 -2.39 -0.02 2.69 15 22 H 0.07 2.32 7.12 -2.38 -0.02 2.31 15 23 H 0.11 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.16 2.93 8.14 -2.39 -0.02 2.91 15 25 H 0.16 2.86 8.14 -2.38 -0.02 2.84 15 26 H 0.14 5.13 8.14 -2.39 -0.02 5.11 15 27 H 0.11 5.14 5.53 -2.39 -0.01 5.13 15 Total: -1.00 -69.69 228.24 -0.64 -70.33 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 1.18 Total: 30.36 kcal Atomic # 6 Polarization: -68.37 SS G_CDS: 1.78 Total: -66.59 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.27 Total: -52.64 kcal Atomic # 8 Polarization: -111.66 SS G_CDS: -5.62 Total: -117.28 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.05 Total: 49.25 kcal Atomic # 16 Polarization: 86.87 SS G_CDS: -0.30 Total: 86.57 kcal Total: -69.69 -0.64 -70.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550850.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.006 kcal (2) G-P(sol) polarization free energy of solvation -69.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds