Wall clock time and date at job start Mon Mar 30 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35287 * 126.34582 * 2 1 4 4 N 1.33530 * 107.91630 * 179.97438 * 3 2 1 5 5 C 1.31995 * 108.66248 * 0.02562 * 4 3 2 6 6 C 1.46119 * 125.76664 * 180.02562 * 5 4 3 7 7 C 1.39146 * 126.60991 * 359.68068 * 6 5 4 8 8 N 1.32292 * 107.63226 * 179.86837 * 7 6 5 9 9 C 1.33201 * 109.05567 * 0.40397 * 8 7 6 10 10 C 1.39209 * 125.50463 * 179.76072 * 9 8 7 11 11 H 1.08003 * 119.99759 * 174.17084 * 10 9 8 12 12 C 1.40359 * 120.00010 * 354.17791 * 10 9 8 13 13 N 1.30614 * 120.00307 * 6.06599 * 12 10 9 14 14 Si 1.86799 * 119.99737 * 186.07056 * 12 10 9 15 15 H 1.48495 * 109.47166 * 94.98289 * 14 12 10 16 16 H 1.48503 * 109.46804 * 214.98064 * 14 12 10 17 17 H 1.48496 * 109.47132 * 334.98029 * 14 12 10 18 18 O 1.34970 * 108.98706 * 359.74578 * 9 8 7 19 19 O 1.34640 * 126.34353 * 179.68777 * 2 1 3 20 20 H 1.09004 * 109.47120 * 89.99599 * 1 2 3 21 21 H 1.08994 * 109.47088 * 209.99950 * 1 2 3 22 22 H 1.09003 * 109.47083 * 329.99959 * 1 2 3 23 23 H 1.08006 * 126.04286 * 359.95835 * 3 2 1 24 24 H 1.08000 * 126.18411 * 0.03063 * 7 6 5 25 25 H 0.96998 * 120.00598 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3088 1.0897 0.0000 4 7 3.5756 0.6675 0.0006 5 6 3.5810 -0.6524 0.0004 6 6 4.7701 -1.5016 0.0014 7 6 6.0945 -1.0750 -0.0035 8 7 6.8625 -2.1521 0.0023 9 6 6.0899 -3.2371 0.0018 10 6 6.5440 -4.5531 0.0022 11 1 5.8405 -5.3671 0.0967 12 6 7.9162 -4.8219 -0.1201 13 7 8.7772 -3.8398 -0.1150 14 14 8.5109 -6.5845 -0.2902 15 1 8.6792 -6.9135 -1.7284 16 1 9.8126 -6.7372 0.4081 17 1 7.5139 -7.5039 0.3146 18 8 4.7955 -2.8545 0.0011 19 8 2.3049 -1.0845 0.0059 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9820 2.1191 -0.0006 24 1 6.4341 -0.0498 -0.0083 25 1 9.7255 -4.0256 -0.1991 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259647050.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:59 Heat of formation + Delta-G solvation = 30.035705 kcal Electronic energy + Delta-G solvation = -13897.600196 eV Core-core repulsion = 11265.320344 eV Total energy + Delta-G solvation = -2632.279852 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.46947 -41.02372 -34.26721 -34.09380 -32.74599 -32.18389 -29.65880 -27.37480 -24.75205 -22.42177 -21.44560 -20.64083 -19.98032 -17.69010 -16.78757 -16.11905 -15.74314 -14.68352 -14.67471 -14.07777 -13.80475 -13.07405 -12.98644 -12.90216 -12.07917 -11.94689 -11.65216 -11.54036 -10.99679 -10.78820 -10.57436 -10.00246 -9.85668 -9.53591 -8.71627 -8.61097 -7.20980 -7.04290 -4.92190 1.65536 2.66586 2.89281 2.94116 2.95998 3.26893 3.61702 3.66016 4.08916 4.23706 5.03240 5.15615 5.28892 5.42950 5.54174 5.67952 5.88885 5.97588 6.44530 6.53925 6.61351 6.71595 6.87903 7.35540 7.59712 7.82337 8.13070 8.35872 8.46559 9.58972 9.86582 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.072427 B = 0.006277 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.502372 B = 4459.887816 C = 4828.311674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.109 4.109 3 C -0.022 4.022 4 N -0.515 5.515 5 C 0.334 3.666 6 C -0.190 4.190 7 C 0.117 3.883 8 N -0.530 5.530 9 C 0.342 3.658 10 C -0.403 4.403 11 H 0.102 0.898 12 C 0.069 3.931 13 N -0.702 5.702 14 Si 0.936 3.064 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.256 1.256 18 O -0.239 6.239 19 O -0.204 6.204 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.176 0.824 24 H 0.167 0.833 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 1.821 -0.185 7.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.162 4.162 3 C -0.163 4.163 4 N -0.245 5.245 5 C 0.137 3.863 6 C -0.246 4.246 7 C -0.042 4.042 8 N -0.258 5.258 9 C 0.166 3.834 10 C -0.435 4.435 11 H 0.120 0.880 12 C -0.160 4.160 13 N -0.324 5.324 14 Si 0.758 3.242 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.179 1.179 18 O -0.136 6.136 19 O -0.094 6.094 20 H 0.092 0.908 21 H 0.089 0.911 22 H 0.102 0.898 23 H 0.193 0.807 24 H 0.184 0.816 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.648 2.063 -0.179 6.015 hybrid contribution -1.200 -0.857 -0.087 1.478 sum -6.848 1.205 -0.265 6.958 Atomic orbital electron populations 1.20052 0.84962 1.03398 1.02788 1.23326 0.94590 0.84954 1.13372 1.22927 0.88169 0.99492 1.05747 1.70633 1.22085 1.07204 1.24597 1.21943 0.79927 0.87743 0.96651 1.18562 0.89885 0.80796 1.35325 1.23791 0.87150 0.99358 0.93896 1.71456 1.30544 0.95692 1.28138 1.22240 0.74693 0.95495 0.90962 1.18411 0.93305 0.88529 1.43270 0.87977 1.26071 0.95758 1.00826 0.93348 1.69965 1.03737 1.33582 1.25105 0.85834 0.79027 0.79650 0.79686 1.18844 1.19478 1.17949 1.84573 1.31531 1.19751 1.77778 1.84531 1.17707 1.35860 1.71279 0.90808 0.91093 0.89813 0.80689 0.81598 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.44 36.01 0.38 -0.26 15 2 C -0.11 -1.90 7.40 -35.36 -0.26 -2.17 15 3 C -0.02 -0.39 11.80 -17.87 -0.21 -0.60 15 4 N -0.51 -11.25 11.29 -11.97 -0.14 -11.38 15 5 C 0.33 7.98 8.14 -14.32 -0.12 7.86 15 6 C -0.19 -4.96 7.36 -36.09 -0.27 -5.22 15 7 C 0.12 2.99 11.91 -17.02 -0.20 2.79 15 8 N -0.53 -14.84 9.36 -12.87 -0.12 -14.96 15 9 C 0.34 9.58 7.69 -16.60 -0.13 9.45 15 10 C -0.40 -10.40 9.42 -38.42 -0.36 -10.76 15 11 H 0.10 2.42 7.86 -52.48 -0.41 2.01 15 12 C 0.07 1.63 5.49 -17.27 -0.09 1.54 15 13 N -0.70 -17.61 11.87 55.57 0.66 -16.95 15 14 Si 0.94 17.04 29.57 -169.99 -5.03 12.01 15 15 H -0.26 -4.73 7.11 56.52 0.40 -4.32 15 16 H -0.27 -4.76 7.11 56.52 0.40 -4.35 15 17 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 18 O -0.24 -6.63 10.85 0.97 0.01 -6.62 15 19 O -0.20 -4.54 10.81 3.62 0.04 -4.50 15 20 H 0.07 0.74 8.14 -51.93 -0.42 0.31 15 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.18 2.33 8.06 -52.48 -0.42 1.91 15 24 H 0.17 3.72 8.06 -52.49 -0.42 3.30 15 25 H 0.29 6.35 8.29 -40.82 -0.34 6.01 15 LS Contribution 241.41 15.07 3.64 3.64 Total: -1.00 -30.89 241.41 -3.86 -34.75 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -1.66 Total: 1.38 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.27 Total: 2.63 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.40 Total: -43.29 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.05 Total: -11.12 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.89 -3.86 -34.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647050.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.789 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds