Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.36126 * 119.40912 * 269.73015 * 10 9 7 12 12 C 1.35075 * 121.76727 * 179.72825 * 11 10 9 13 13 C 1.40404 * 119.66483 * 0.55896 * 12 11 10 14 14 O 1.33854 * 136.02159 * 179.71247 * 13 12 11 15 15 N 1.21018 * 112.86832 * 179.97438 * 14 13 12 16 16 C 1.30327 * 113.22805 * 359.97438 * 15 14 13 17 17 C 1.40638 * 118.47554 * 359.70394 * 13 12 11 18 18 C 1.35080 * 119.40680 * 89.99649 * 10 9 7 19 19 O 1.21892 * 120.37543 * 359.96041 * 18 10 9 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 23 23 H 1.08001 * 119.12081 * 0.02562 * 11 10 9 24 24 H 1.07993 * 120.16477 * 180.26555 * 12 11 10 25 25 H 1.08007 * 127.35936 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6331 -4.1244 -1.1853 12 6 3.5141 -5.1469 -1.2409 13 6 3.9975 -5.7131 -0.0505 14 8 4.8409 -6.7008 0.2732 15 7 4.9625 -6.8424 1.4689 16 6 4.2462 -6.0023 2.1615 17 6 3.5479 -5.1864 1.1735 18 6 2.6341 -4.1168 1.1773 19 8 2.2360 -3.6500 2.2306 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.2638 -3.6984 -2.1064 24 1 3.8412 -5.5300 -2.1961 25 1 4.1826 -5.9264 3.2370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259647318.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = 46.081946 kcal Electronic energy + Delta-G solvation = -14317.532677 eV Core-core repulsion = 11685.948642 eV Total energy + Delta-G solvation = -2631.584035 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.43523 -40.31175 -36.40604 -34.19579 -33.09386 -32.39625 -29.51533 -27.87922 -24.97766 -23.64561 -22.56069 -21.44094 -18.31846 -17.96671 -17.42935 -16.87066 -16.36189 -15.00778 -14.71773 -14.69217 -14.25644 -13.71933 -12.96197 -12.54647 -11.93980 -11.72237 -11.63821 -11.20455 -11.08239 -10.85916 -10.41522 -10.23504 -10.04834 -9.52315 -9.20784 -8.69610 -7.54964 -6.31804 -4.39595 1.00721 1.82609 2.47101 2.95906 3.17384 3.25469 3.27678 3.37313 3.99397 4.25878 4.42626 4.81278 4.90006 5.04647 5.09060 5.31549 5.88290 5.96940 6.05521 6.16301 6.61745 6.93208 7.05353 7.62133 7.72822 7.81114 8.40021 8.51913 8.65051 9.27432 10.76692 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.048212 B = 0.007718 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.622941 B = 3626.795540 C = 3730.639916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.220 3.780 10 N -0.483 5.483 11 C 0.204 3.796 12 C -0.244 4.244 13 C 0.095 3.905 14 O 0.077 5.923 15 N -0.367 5.367 16 C 0.076 3.924 17 C -0.312 4.312 18 C 0.564 3.436 19 O -0.523 6.523 20 H 0.268 0.732 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.176 0.824 24 H 0.153 0.847 25 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 -8.453 -3.985 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.103 3.897 10 N -0.191 5.191 11 C 0.071 3.929 12 C -0.269 4.269 13 C 0.032 3.968 14 O 0.023 5.977 15 N -0.079 5.079 16 C -0.108 4.108 17 C -0.320 4.320 18 C 0.361 3.639 19 O -0.401 6.401 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.193 0.807 24 H 0.170 0.830 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.309 -8.954 -2.995 10.831 hybrid contribution -0.058 1.549 0.021 1.550 sum 5.250 -7.405 -2.973 9.552 Atomic orbital electron populations 1.69923 1.06074 1.27660 1.48874 1.24913 0.94965 0.99523 0.94196 0.86302 0.79992 0.82521 0.77878 1.19576 1.20622 1.20567 1.21261 0.93541 0.89716 1.53365 0.91811 1.20017 0.87388 0.81630 1.00659 1.46217 1.38040 1.30097 1.04769 1.21954 0.90053 0.89835 0.91098 1.19127 1.08305 1.04024 0.95483 1.21914 0.90001 0.88465 0.96376 1.84613 1.50749 1.43429 1.18868 1.73695 1.22293 1.22866 0.88997 1.25502 0.93014 0.91028 1.01265 1.21403 1.10720 1.06457 0.93397 1.15563 0.81845 0.82540 0.83951 1.90890 1.58305 1.61605 1.29315 0.92235 0.92953 0.91932 0.80675 0.82951 0.78209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 13.29 55.43 0.74 -23.76 15 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.61 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.54 -14.22 9.38 -34.44 -0.32 -14.54 15 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 9 C 0.22 5.23 5.08 -5.19 -0.03 5.21 15 10 N -0.48 -9.80 2.59 -120.90 -0.31 -10.11 15 11 C 0.20 3.09 10.23 -16.77 -0.17 2.92 15 12 C -0.24 -3.30 10.03 -39.89 -0.40 -3.70 15 13 C 0.10 1.54 7.67 -37.86 -0.29 1.25 15 14 O 0.08 1.23 11.11 17.64 0.20 1.42 15 15 N -0.37 -6.00 11.97 31.85 0.38 -5.62 15 16 C 0.08 1.25 12.44 -15.12 -0.19 1.07 15 17 C -0.31 -5.83 6.52 -105.00 -0.68 -6.51 15 18 C 0.56 12.33 7.43 -15.20 -0.11 12.22 15 19 O -0.52 -13.35 16.67 5.02 0.08 -13.27 15 20 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 21 H 0.05 1.18 7.99 -51.93 -0.41 0.76 15 22 H 0.06 1.68 7.40 -51.93 -0.38 1.30 15 23 H 0.18 2.04 8.01 -52.49 -0.42 1.62 15 24 H 0.15 1.47 8.06 -52.49 -0.42 1.04 15 25 H 0.20 2.70 8.06 -52.48 -0.42 2.27 15 LS Contribution 236.36 15.07 3.56 3.56 Total: -1.00 -30.92 236.36 -4.28 -35.20 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: -1.61 Total: -2.65 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.29 Total: -0.39 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.80 Total: -39.49 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.28 Total: -11.85 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.92 -4.28 -35.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647318.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.284 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds