Wall clock time and date at job start Mon Mar 30 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.36126 * 119.40912 * 269.73015 * 10 9 7 12 12 C 1.35075 * 121.76727 * 179.72825 * 11 10 9 13 13 C 1.40404 * 119.66483 * 0.55896 * 12 11 10 14 14 O 1.33854 * 136.02159 * 179.71247 * 13 12 11 15 15 N 1.21018 * 112.86832 * 179.97438 * 14 13 12 16 16 C 1.30327 * 113.22805 * 359.97438 * 15 14 13 17 17 C 1.40638 * 118.47554 * 359.70394 * 13 12 11 18 18 C 1.35080 * 119.40680 * 89.99649 * 10 9 7 19 19 O 1.21892 * 120.37543 * 359.96041 * 18 10 9 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 23 23 H 1.08001 * 119.12081 * 0.02562 * 11 10 9 24 24 H 1.07993 * 120.16477 * 180.26555 * 12 11 10 25 25 H 1.08007 * 127.35936 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6331 -4.1244 -1.1853 12 6 3.5141 -5.1469 -1.2409 13 6 3.9975 -5.7131 -0.0505 14 8 4.8409 -6.7008 0.2732 15 7 4.9625 -6.8424 1.4689 16 6 4.2462 -6.0023 2.1615 17 6 3.5479 -5.1864 1.1735 18 6 2.6341 -4.1168 1.1773 19 8 2.2360 -3.6500 2.2306 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.2638 -3.6984 -2.1064 24 1 3.8412 -5.5300 -2.1961 25 1 4.1826 -5.9264 3.2370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259647318.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:42 Heat of formation + Delta-G solvation = 25.787287 kcal Electronic energy + Delta-G solvation = -14318.412720 eV Core-core repulsion = 11685.948642 eV Total energy + Delta-G solvation = -2632.464077 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.75821 -41.84484 -38.00524 -35.85656 -34.56836 -34.06374 -30.90154 -29.69139 -26.62772 -25.01984 -24.27448 -22.81988 -19.66881 -19.40891 -18.93268 -18.64448 -17.96637 -16.64987 -16.37451 -16.15514 -15.85091 -15.00725 -14.46044 -14.36828 -13.66806 -13.33292 -13.10487 -12.79727 -12.72905 -12.47059 -12.32912 -11.85112 -11.49857 -11.23667 -10.84431 -10.71696 -8.99201 -8.32718 -6.48190 -0.31970 0.41537 1.19616 1.37864 1.40906 1.51109 1.61445 1.88050 2.33999 2.53329 3.00244 3.12697 3.50038 3.62025 3.89451 4.01067 4.52085 4.67875 4.80669 4.87669 5.00300 5.03767 5.45906 5.63502 5.82808 6.20395 6.57768 6.93182 7.12408 7.23260 8.75267 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.048212 B = 0.007718 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.622941 B = 3626.795540 C = 3730.639916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.264 1.264 6 H -0.283 1.283 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.236 3.764 10 N -0.493 5.493 11 C 0.188 3.812 12 C -0.209 4.209 13 C 0.105 3.895 14 O 0.086 5.914 15 N -0.367 5.367 16 C 0.078 3.922 17 C -0.344 4.344 18 C 0.550 3.450 19 O -0.584 6.584 20 H 0.272 0.728 21 H 0.066 0.934 22 H 0.019 0.981 23 H 0.214 0.786 24 H 0.207 0.793 25 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 -9.007 -5.996 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.189 1.189 6 H -0.209 1.209 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.117 3.883 10 N -0.201 5.201 11 C 0.058 3.942 12 C -0.233 4.233 13 C 0.042 3.958 14 O 0.033 5.967 15 N -0.078 5.078 16 C -0.107 4.107 17 C -0.352 4.352 18 C 0.350 3.650 19 O -0.467 6.467 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.037 0.963 23 H 0.231 0.769 24 H 0.224 0.776 25 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.739 -9.553 -5.074 12.744 hybrid contribution -0.443 1.596 0.603 1.763 sum 6.296 -7.956 -4.471 11.088 Atomic orbital electron populations 1.70009 1.07356 1.28656 1.49655 1.25719 0.95754 1.02765 0.93771 0.85348 0.78629 0.78585 0.78157 1.19453 1.18917 1.20927 1.21487 0.93267 0.91145 1.53242 0.92696 1.19552 0.87566 0.82216 0.99014 1.46012 1.38126 1.29785 1.06199 1.22695 0.90607 0.90452 0.90423 1.19769 1.05337 1.01594 0.96563 1.22293 0.89199 0.87859 0.96428 1.84623 1.50415 1.43062 1.18647 1.73684 1.22164 1.22712 0.89208 1.25867 0.92326 0.90318 1.02223 1.21406 1.11402 1.06691 0.95701 1.16030 0.82123 0.83099 0.83731 1.90839 1.60790 1.63798 1.31293 0.91914 0.91649 0.96316 0.76899 0.77600 0.76238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.20 13.29 21.45 0.28 -50.92 15 2 C 0.02 1.11 5.46 84.65 0.46 1.58 15 3 Si 0.97 42.16 29.54 68.60 2.03 44.19 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.26 -10.76 7.11 99.48 0.71 -10.06 15 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 7 C -0.55 -29.43 9.38 25.60 0.24 -29.19 15 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 15 9 C 0.24 11.44 5.08 85.63 0.44 11.88 15 10 N -0.49 -19.93 2.59 -654.37 -1.69 -21.63 15 11 C 0.19 5.15 10.23 83.30 0.85 6.00 15 12 C -0.21 -4.73 10.03 22.07 0.22 -4.51 15 13 C 0.11 3.10 7.67 23.38 0.18 3.28 15 14 O 0.09 2.48 11.11 73.25 0.81 3.29 15 15 N -0.37 -11.25 11.97 -53.26 -0.64 -11.88 15 16 C 0.08 2.47 12.44 86.91 1.08 3.55 15 17 C -0.34 -12.66 6.52 -20.11 -0.13 -12.79 15 18 C 0.55 24.62 7.43 84.79 0.63 25.25 15 19 O -0.58 -31.47 16.67 -4.97 -0.08 -31.55 15 20 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 21 H 0.07 2.96 7.99 -2.39 -0.02 2.94 15 22 H 0.02 1.06 7.40 -2.38 -0.02 1.05 15 23 H 0.21 4.09 8.01 -2.91 -0.02 4.07 15 24 H 0.21 2.53 8.06 -2.91 -0.02 2.50 15 25 H 0.22 5.81 8.06 -2.91 -0.02 5.79 15 Total: -1.00 -69.33 236.36 5.90 -63.43 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: 1.22 Total: 0.03 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 3.97 Total: 5.04 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -2.05 Total: -84.43 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: 0.73 Total: -28.26 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -69.33 5.90 -63.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647318.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.214 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds