Wall clock time and date at job start Mon Mar 30 2020 02:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33724 * 126.98161 * 2 1 4 4 N 1.20603 * 113.21487 * 179.73883 * 3 2 1 5 5 C 1.29953 * 112.68586 * 359.97438 * 4 3 2 6 6 C 1.38794 * 126.97708 * 179.67946 * 2 1 3 7 7 C 1.46854 * 128.66521 * 0.24578 * 6 2 1 8 8 O 1.34479 * 127.25626 * 359.67864 * 7 6 2 9 9 N 1.20529 * 113.17356 * 179.81684 * 8 7 6 10 10 C 1.29836 * 113.41915 * 0.47740 * 9 8 7 11 11 C 1.41388 * 127.26861 * 179.97438 * 7 6 2 12 12 C 1.40782 * 128.81859 * 359.96691 * 11 7 6 13 13 H 1.08005 * 120.00169 * 359.97438 * 12 11 7 14 14 C 1.39782 * 120.00026 * 179.97438 * 12 11 7 15 15 N 1.31012 * 120.00374 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99705 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47478 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47125 * 120.00355 * 16 14 12 19 19 H 1.48510 * 109.46943 * 239.99675 * 16 14 12 20 20 H 1.09005 * 109.47225 * 0.02749 * 1 2 3 21 21 H 1.09000 * 109.47407 * 120.02574 * 1 2 3 22 22 H 1.08996 * 109.47170 * 240.02935 * 1 2 3 23 23 H 1.07998 * 127.30555 * 179.97438 * 5 4 3 24 24 H 1.07996 * 127.21693 * 179.72083 * 10 9 8 25 25 H 0.97001 * 120.00863 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3114 1.0682 0.0000 4 7 3.4827 0.7812 0.0051 5 6 3.6842 -0.5026 0.0098 6 6 2.3418 -1.1088 0.0062 7 6 1.9776 -2.5314 0.0092 8 8 0.7388 -3.0547 0.0126 9 7 0.7330 -4.2600 0.0110 10 6 1.9219 -4.7817 0.0164 11 6 2.8554 -3.6399 0.0151 12 6 4.2631 -3.6508 0.0187 13 1 4.8104 -2.7197 0.0166 14 6 4.9526 -4.8667 0.0250 15 7 4.2889 -5.9962 0.0280 16 14 6.8206 -4.8811 0.0290 17 1 7.3265 -3.4849 0.0253 18 1 7.3076 -5.5802 1.2453 19 1 7.3128 -5.5898 -1.1797 20 1 -0.3634 1.0277 -0.0005 21 1 -0.3634 -0.5142 -0.8897 22 1 -0.3633 -0.5134 0.8902 23 1 4.6343 -1.0160 0.0144 24 1 2.1744 -5.8318 0.0205 25 1 4.7673 -6.8401 0.0319 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259671274.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:42 Heat of formation + Delta-G solvation = 83.449781 kcal Electronic energy + Delta-G solvation = -14385.940706 eV Core-core repulsion = 11755.977061 eV Total energy + Delta-G solvation = -2629.963644 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.46576 -44.60635 -36.40940 -35.07925 -33.96995 -33.29804 -31.68166 -28.68645 -28.04614 -24.64601 -23.60207 -22.37863 -21.01224 -19.37576 -18.46943 -18.21036 -17.73062 -17.30728 -16.74743 -15.72538 -15.15646 -14.50468 -14.09640 -13.91052 -13.65863 -13.37304 -13.12898 -12.89378 -12.78542 -12.13506 -11.89137 -11.78503 -11.45687 -11.31032 -10.68675 -10.43441 -9.24244 -8.87053 -6.48396 0.22203 0.90229 1.36433 1.39332 1.55204 1.75921 2.04903 2.13107 2.20389 2.88000 3.16234 3.43978 3.80205 4.12991 4.13666 4.53599 4.62899 4.79502 4.79636 4.89874 5.10424 5.19633 5.29959 5.45761 5.64040 6.14523 6.48411 6.63583 7.46810 8.04346 8.14785 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.010782 C = 0.007972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.413694 B = 2596.213350 C = 3511.481845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.074 4.074 3 O 0.093 5.907 4 N -0.379 5.379 5 C -0.010 4.010 6 C -0.083 4.083 7 C -0.213 4.213 8 O 0.077 5.923 9 N -0.390 5.390 10 C -0.057 4.057 11 C 0.011 3.989 12 C -0.430 4.430 13 H 0.098 0.902 14 C 0.031 3.969 15 N -0.818 5.818 16 Si 0.998 3.002 17 H -0.252 1.252 18 H -0.263 1.263 19 H -0.262 1.262 20 H 0.108 0.892 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.200 0.800 24 H 0.196 0.804 25 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 5.140 -0.009 5.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.138 4.138 3 O 0.028 5.972 4 N -0.084 5.084 5 C -0.190 4.190 6 C -0.088 4.088 7 C -0.272 4.272 8 O 0.004 5.996 9 N -0.092 5.092 10 C -0.238 4.238 11 C 0.006 3.994 12 C -0.458 4.458 13 H 0.116 0.884 14 C -0.186 4.186 15 N -0.444 5.444 16 Si 0.818 3.182 17 H -0.176 1.176 18 H -0.187 1.187 19 H -0.187 1.187 20 H 0.127 0.873 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.217 0.783 24 H 0.213 0.787 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.453 5.405 -0.012 5.424 hybrid contribution 1.286 -1.300 0.007 1.829 sum 0.833 4.105 -0.004 4.189 Atomic orbital electron populations 1.20276 0.81190 1.05338 1.04170 1.25214 0.96742 0.84161 1.07638 1.84339 1.10930 1.33312 1.68573 1.73384 0.97252 1.17441 1.20295 1.26271 0.99439 0.88945 1.04343 1.19533 0.92386 0.89186 1.07701 1.20541 0.83534 0.91214 1.31899 1.84175 1.29016 1.14216 1.72146 1.72898 1.25343 0.92353 1.18638 1.26645 0.86979 1.02323 1.07808 1.20418 0.95096 0.88971 0.94961 1.19323 0.89349 0.95065 1.42111 0.88399 1.26985 1.07034 0.93859 0.90703 1.69641 1.40796 0.99918 1.34009 0.84875 0.73887 0.80256 0.79204 1.17551 1.18701 1.18691 0.87345 0.89469 0.89487 0.78331 0.78732 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.39 10.05 71.23 0.72 -0.68 15 2 C -0.07 -2.67 7.62 25.82 0.20 -2.48 15 3 O 0.09 3.37 11.07 74.96 0.83 4.20 15 4 N -0.38 -14.75 11.98 -53.51 -0.64 -15.39 15 5 C -0.01 -0.43 11.76 87.36 1.03 0.60 15 6 C -0.08 -3.60 6.51 -18.51 -0.12 -3.72 15 7 C -0.21 -10.50 7.47 25.30 0.19 -10.31 15 8 O 0.08 3.74 10.76 67.89 0.73 4.47 15 9 N -0.39 -19.76 11.93 -52.68 -0.63 -20.39 15 10 C -0.06 -2.99 11.23 87.43 0.98 -2.00 15 11 C 0.01 0.58 6.27 -19.44 -0.12 0.46 15 12 C -0.43 -21.29 9.12 23.27 0.21 -21.08 15 13 H 0.10 4.51 5.08 -2.91 -0.01 4.49 15 14 C 0.03 1.40 5.49 85.19 0.47 1.87 15 15 N -0.82 -38.46 10.64 21.81 0.23 -38.23 15 16 Si 1.00 34.30 29.56 68.60 2.03 36.33 15 17 H -0.25 -8.41 7.11 99.48 0.71 -7.70 15 18 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 19 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 20 H 0.11 2.07 8.14 -2.38 -0.02 2.05 15 21 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.20 7.73 5.84 -2.91 -0.02 7.71 15 24 H 0.20 10.09 6.28 -2.91 -0.02 10.07 15 25 H 0.30 12.43 8.30 -92.71 -0.77 11.66 15 Total: -1.00 -56.83 232.69 7.34 -49.49 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.24 Total: 16.86 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 3.55 Total: -37.34 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.04 Total: -74.01 kcal Atomic # 8 Polarization: 7.11 SS G_CDS: 1.56 Total: 8.67 kcal Atomic # 14 Polarization: 34.30 SS G_CDS: 2.03 Total: 36.33 kcal Total: -56.83 7.34 -49.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259671274.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.938 kcal (2) G-P(sol) polarization free energy of solvation -56.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds