Wall clock time and date at job start Mon Mar 30 2020 02:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35459 * 117.00014 * 2 1 4 4 N 1.32087 * 120.00154 * 0.02562 * 3 2 1 5 5 C 1.32292 * 122.24607 * 179.97438 * 4 3 2 6 6 C 1.38121 * 121.52947 * 0.03215 * 5 4 3 7 7 C 1.38665 * 119.10500 * 359.95258 * 6 5 4 8 8 O 1.34749 * 134.87620 * 179.72084 * 7 6 5 9 9 C 1.35211 * 107.82727 * 179.97438 * 8 7 6 10 10 C 1.39854 * 125.15249 * 180.14172 * 9 8 7 11 11 H 1.08002 * 120.00138 * 180.24594 * 10 9 8 12 12 C 1.40394 * 120.00026 * 0.24985 * 10 9 8 13 13 N 1.30568 * 119.99976 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00288 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46606 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46785 * 119.99994 * 14 12 10 17 17 H 1.48500 * 109.47412 * 240.00578 * 14 12 10 18 18 N 1.32486 * 109.69780 * 0.36061 * 9 8 7 19 19 C 1.33804 * 108.91433 * 359.77625 * 18 9 8 20 20 H 1.08999 * 109.47379 * 60.00075 * 1 2 3 21 21 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46936 * 299.99941 * 1 2 3 23 23 H 1.07998 * 119.23838 * 180.02562 * 5 4 3 24 24 H 1.08004 * 120.44977 * 180.02562 * 6 5 4 25 25 H 0.97000 * 120.00489 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3247 2.3147 0.0005 5 6 1.8786 3.5161 0.0010 6 6 3.2502 3.6790 0.0004 7 6 4.0629 2.5555 0.0002 8 8 5.3938 2.3447 -0.0050 9 6 5.6013 1.0086 -0.0013 10 6 6.8549 0.3885 -0.0019 11 1 6.9242 -0.6893 -0.0028 12 6 8.0232 1.1670 -0.0014 13 7 7.9394 2.4700 0.0003 14 14 9.6976 0.3388 -0.0015 15 1 9.5203 -1.1357 -0.0028 16 1 10.4518 0.7474 -1.2137 17 1 10.4514 0.7460 1.2114 18 7 4.4373 0.3759 -0.0018 19 6 3.4517 1.2808 -0.0008 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.2437 4.3897 0.0019 24 1 3.6839 4.6681 0.0013 25 1 8.7466 3.0079 0.0010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259710033.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:46 Heat of formation + Delta-G solvation = -32.099258 kcal Electronic energy + Delta-G solvation = -14275.375768 eV Core-core repulsion = 11640.401542 eV Total energy + Delta-G solvation = -2634.974226 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.48991 -40.58057 -38.29815 -35.93199 -35.07342 -32.21470 -31.09889 -28.96497 -27.64776 -24.13703 -24.07086 -22.47852 -20.37767 -19.27553 -18.08984 -17.71649 -17.38810 -17.08999 -16.46643 -16.04348 -15.55613 -14.77011 -14.25169 -13.96121 -13.70895 -13.47515 -13.10267 -13.02310 -12.52705 -12.38547 -11.98325 -11.79774 -11.42418 -10.97255 -10.75630 -10.24633 -9.08481 -9.05895 -6.98705 0.01448 0.43042 1.28460 1.37450 1.59711 1.89350 2.10542 2.20341 2.28321 2.80437 3.09343 3.42649 3.71521 4.02414 4.41804 4.48527 4.49216 4.58370 4.72678 4.83796 4.90028 5.18918 5.34905 5.67777 5.85712 6.19168 6.28526 6.42499 6.95294 7.45094 7.97671 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.051744 B = 0.008049 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.999737 B = 3477.693967 C = 4003.548111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.299 3.701 4 N -0.521 5.521 5 C 0.085 3.915 6 C -0.156 4.156 7 C -0.039 4.039 8 O -0.207 6.207 9 C 0.335 3.665 10 C -0.426 4.426 11 H 0.127 0.873 12 C 0.027 3.973 13 N -0.787 5.787 14 Si 1.024 2.976 15 H -0.248 1.248 16 H -0.254 1.254 17 H -0.254 1.254 18 N -0.637 5.637 19 C 0.003 3.997 20 H 0.059 0.941 21 H 0.119 0.881 22 H 0.059 0.941 23 H 0.212 0.788 24 H 0.159 0.841 25 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 2.008 0.008 4.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.230 6.230 3 C 0.114 3.886 4 N -0.249 5.249 5 C -0.067 4.067 6 C -0.177 4.177 7 C -0.099 4.099 8 O -0.103 6.103 9 C 0.155 3.845 10 C -0.460 4.460 11 H 0.144 0.856 12 C -0.196 4.196 13 N -0.412 5.412 14 Si 0.840 3.160 15 H -0.171 1.171 16 H -0.178 1.178 17 H -0.178 1.178 18 N -0.374 5.374 19 C -0.120 4.120 20 H 0.078 0.922 21 H 0.137 0.863 22 H 0.077 0.923 23 H 0.229 0.771 24 H 0.177 0.823 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.184 1.243 0.006 4.365 hybrid contribution 1.302 0.708 0.000 1.482 sum -2.882 1.951 0.005 3.480 Atomic orbital electron populations 1.23060 0.75881 1.04357 1.02347 1.86207 1.24310 1.24320 1.88164 1.18964 0.85046 0.85812 0.98817 1.67219 1.39030 0.98311 1.20330 1.22563 0.90927 0.93965 0.99244 1.20967 0.93004 0.96291 1.07451 1.21150 0.83672 0.97280 1.07762 1.84962 1.20418 1.28223 1.76679 1.22952 0.95165 0.75676 0.90685 1.19287 0.85619 0.96511 1.44534 0.85566 1.27460 1.06678 0.95222 0.90211 1.69694 1.35223 1.07559 1.28747 0.84535 0.72147 0.79529 0.79797 1.17082 1.17848 1.17838 1.70824 0.96677 1.31246 1.38679 1.20212 0.93859 0.91556 1.06370 0.92249 0.86252 0.92253 0.77140 0.82345 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 10.39 113.37 1.18 2.33 15 2 O -0.32 -14.32 10.48 -87.57 -0.92 -15.24 15 3 C 0.30 14.35 7.57 85.32 0.65 15.00 15 4 N -0.52 -21.03 9.21 -307.48 -2.83 -23.86 15 5 C 0.08 2.96 11.15 84.60 0.94 3.90 15 6 C -0.16 -6.31 10.11 22.34 0.23 -6.09 15 7 C -0.04 -2.05 7.49 23.14 0.17 -1.88 15 8 O -0.21 -12.11 9.00 -16.09 -0.14 -12.26 15 9 C 0.34 19.92 7.60 84.99 0.65 20.57 15 10 C -0.43 -22.87 9.45 23.19 0.22 -22.65 15 11 H 0.13 6.40 7.85 -2.91 -0.02 6.38 15 12 C 0.03 1.26 5.50 85.41 0.47 1.73 15 13 N -0.79 -39.03 11.93 21.90 0.26 -38.77 15 14 Si 1.02 33.92 29.56 68.60 2.03 35.95 15 15 H -0.25 -7.96 7.11 99.48 0.71 -7.26 15 16 H -0.25 -7.90 7.11 99.48 0.71 -7.19 15 17 H -0.25 -7.89 7.11 99.48 0.71 -7.19 15 18 N -0.64 -38.46 11.34 -301.51 -3.42 -41.87 15 19 C 0.00 0.15 7.22 40.28 0.29 0.44 15 20 H 0.06 1.69 8.11 -2.39 -0.02 1.67 15 21 H 0.12 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.06 1.69 8.11 -2.38 -0.02 1.67 15 23 H 0.21 4.88 8.06 -2.91 -0.02 4.86 15 24 H 0.16 5.29 8.06 -2.91 -0.02 5.26 15 25 H 0.31 13.14 8.29 -92.71 -0.77 12.37 15 Total: -1.00 -70.36 235.96 0.99 -69.37 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.22 Total: 13.32 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 4.79 Total: 13.36 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -5.99 Total: -104.51 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.06 Total: -27.49 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Total: -70.36 0.99 -69.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259710033.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.273 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds