Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31083 * 1 3 3 Si 1.86806 * 120.00137 * 2 1 4 4 H 1.48504 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46803 * 299.99955 * 3 2 1 6 6 H 1.48494 * 109.47107 * 60.00152 * 3 2 1 7 7 C 1.39675 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00097 * 169.74532 * 7 2 1 9 9 C 1.40474 * 119.99792 * 349.73997 * 7 2 1 10 10 C 1.44328 * 123.75777 * 337.13834 * 9 7 2 11 11 C 1.32490 * 114.47497 * 179.97438 * 10 9 7 12 12 S 1.75460 * 111.43946 * 359.97438 * 11 10 9 13 13 C 1.39745 * 123.75440 * 157.13518 * 9 7 2 14 14 C 1.41442 * 125.25608 * 0.03616 * 13 9 7 15 15 C 1.38338 * 126.12880 * 179.69550 * 14 13 9 16 16 C 1.40300 * 106.52499 * 179.90834 * 15 14 13 17 17 C 1.35196 * 107.23516 * 0.35905 * 16 15 14 18 18 O 1.34250 * 109.07275 * 359.77405 * 17 16 15 19 19 H 0.97005 * 119.99698 * 359.97438 * 1 2 3 20 20 H 1.08002 * 122.77018 * 359.97438 * 10 9 7 21 21 H 1.08001 * 124.28451 * 180.26524 * 11 10 9 22 22 H 1.08004 * 126.73415 * 0.02562 * 15 14 13 23 23 H 1.07997 * 126.38661 * 180.13424 * 16 15 14 24 24 H 1.08002 * 125.46607 * 179.77997 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6178 0.0000 4 1 3.7049 1.3463 -0.0006 5 1 1.8861 2.3964 -1.2126 6 1 1.8862 2.3964 1.2125 7 6 2.0092 -1.2096 -0.0005 8 1 3.0762 -1.2170 -0.1670 9 6 1.3236 -2.4165 0.2156 10 6 0.0543 -2.5070 0.8965 11 6 -0.4278 -3.7369 0.9979 12 16 0.6463 -4.9098 0.2568 13 6 1.7948 -3.6632 -0.2048 14 6 3.0086 -3.8867 -0.8956 15 6 3.4948 -5.1121 -1.3147 16 6 4.7180 -4.8588 -1.9534 17 6 4.9317 -3.5251 -1.8952 18 8 3.9026 -2.9434 -1.2589 19 1 -0.4850 0.8401 0.0004 20 1 -0.4604 -1.6433 1.2909 21 1 -1.3656 -3.9856 1.4723 22 1 3.0242 -6.0747 -1.1786 23 1 5.3695 -5.5928 -2.4042 24 1 5.7922 -3.0102 -2.2964 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259730406.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = 24.921055 kcal Electronic energy + Delta-G solvation = -12220.851434 eV Core-core repulsion = 9998.809914 eV Total energy + Delta-G solvation = -2222.041520 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.12696 -36.43771 -33.18027 -31.83122 -30.43870 -27.88605 -25.12764 -22.08471 -20.69496 -19.94298 -18.73792 -17.57977 -15.68521 -15.36583 -15.09995 -14.78141 -13.89318 -12.90856 -12.54045 -12.06022 -11.82203 -11.67852 -11.60089 -11.52354 -11.28281 -11.01585 -10.45646 -10.01216 -9.70809 -9.27846 -8.92315 -8.48412 -7.24803 -7.18701 -6.58645 -4.51565 1.87609 2.85263 2.91095 2.96733 3.00485 3.15892 3.43891 3.65768 3.72185 4.05432 4.54136 5.09757 5.88925 5.95147 6.02527 6.29165 6.69772 6.77245 6.94481 7.04673 7.11763 7.29027 7.47847 7.50936 7.77079 8.19619 8.27374 8.44771 8.55336 9.76008 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.013570 C = 0.008835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.127099 B = 2062.889438 C = 3168.297503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.384 4.384 8 H 0.100 0.900 9 C 0.119 3.881 10 C -0.100 4.100 11 C -0.215 4.215 12 S 0.001 5.999 13 C -0.345 4.345 14 C 0.179 3.821 15 C -0.316 4.316 16 C -0.186 4.186 17 C -0.124 4.124 18 O -0.167 6.167 19 H 0.289 0.711 20 H 0.146 0.854 21 H 0.141 0.859 22 H 0.128 0.872 23 H 0.128 0.872 24 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -0.406 0.310 1.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.154 4.154 3 Si 0.748 3.252 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.415 4.415 8 H 0.118 0.882 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.349 4.349 12 S 0.257 5.743 13 C -0.461 4.461 14 C 0.126 3.874 15 C -0.335 4.335 16 C -0.205 4.205 17 C -0.191 4.191 18 O -0.064 6.064 19 H 0.100 0.900 20 H 0.164 0.836 21 H 0.158 0.842 22 H 0.146 0.854 23 H 0.146 0.854 24 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.481 -1.479 0.187 2.101 hybrid contribution 0.340 1.969 0.001 1.998 sum 1.821 0.490 0.189 1.895 Atomic orbital electron populations 1.69858 1.07822 1.30323 1.32021 1.26232 0.95052 1.02438 0.91686 0.85955 0.81138 0.79204 0.78935 1.17706 1.19374 1.19276 1.19650 0.96969 0.89420 1.35429 0.88235 1.18189 0.90471 0.91702 0.88770 1.21594 0.96353 0.96263 0.99031 1.25017 1.03620 0.97272 1.08989 1.82880 1.15798 1.11546 1.64069 1.19740 1.02652 0.95987 1.27677 1.18586 0.88405 0.85382 0.94979 1.21506 0.99962 0.97138 1.14909 1.21294 0.98682 0.95566 1.05002 1.23540 0.94537 0.93118 1.07913 1.84223 1.26970 1.36316 1.58868 0.90016 0.83626 0.84175 0.85421 0.85399 0.80124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.28 10.80 55.54 0.60 -17.68 14 2 C 0.07 1.58 5.38 -17.33 -0.09 1.48 14 3 Si 0.92 17.61 29.57 -169.99 -5.03 12.58 14 4 H -0.25 -4.89 7.11 56.52 0.40 -4.49 14 5 H -0.27 -5.04 7.11 56.52 0.40 -4.63 14 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 7 C -0.38 -9.92 8.60 -38.20 -0.33 -10.24 14 8 H 0.10 2.59 6.10 -52.49 -0.32 2.27 14 9 C 0.12 3.13 5.69 -106.10 -0.60 2.53 14 10 C -0.10 -2.42 9.03 -39.10 -0.35 -2.77 14 11 C -0.22 -4.69 11.05 28.82 0.32 -4.37 14 12 S 0.00 0.03 22.86 -107.50 -2.46 -2.43 14 13 C -0.35 -8.94 6.32 -37.80 -0.24 -9.18 14 14 C 0.18 4.54 6.88 -38.33 -0.26 4.28 14 15 C -0.32 -7.23 10.59 -38.77 -0.41 -7.64 14 16 C -0.19 -3.76 10.87 -39.89 -0.43 -4.19 14 17 C -0.12 -2.53 12.07 29.65 0.36 -2.17 14 18 O -0.17 -4.08 8.43 4.03 0.03 -4.05 14 19 H 0.29 6.05 8.30 -40.82 -0.34 5.71 14 20 H 0.15 3.46 6.37 -52.49 -0.33 3.13 14 21 H 0.14 2.56 8.06 -52.49 -0.42 2.14 14 22 H 0.13 2.78 8.06 -52.48 -0.42 2.35 14 23 H 0.13 2.13 8.06 -52.49 -0.42 1.71 14 24 H 0.18 2.86 8.06 -52.49 -0.42 2.43 14 LS Contribution 232.45 15.07 3.50 3.50 Total: -1.00 -27.37 232.45 -6.88 -34.24 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -1.48 Total: 6.12 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: -2.05 Total: -32.29 kcal Atomic # 7 Polarization: -18.28 SS G_CDS: 0.60 Total: -17.68 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: 0.03 Total: -4.05 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.46 Total: -2.43 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.37 -6.88 -34.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259730406.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.165 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds