Wall clock time and date at job start Mon Mar 30 2020 02:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35200 * 126.50254 * 2 1 4 4 C 1.47069 * 103.27279 * 180.02562 * 3 2 1 5 5 C 1.47361 * 127.40691 * 180.02562 * 4 3 2 6 6 C 1.38639 * 126.56684 * 180.02562 * 5 4 3 7 7 N 1.32496 * 107.65768 * 179.97438 * 6 5 4 8 8 C 1.33051 * 108.97386 * 359.97438 * 7 6 5 9 9 C 1.39421 * 125.54118 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99442 * 180.02562 * 9 8 7 11 11 C 1.40438 * 120.00119 * 0.02562 * 9 8 7 12 12 N 1.30567 * 119.99983 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99802 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46985 * 60.00684 * 13 11 9 15 15 H 1.48504 * 109.46862 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47325 * 300.00486 * 13 11 9 17 17 O 1.34941 * 108.91112 * 359.73735 * 8 7 6 18 18 N 1.31619 * 105.18981 * 0.02562 * 4 3 2 19 19 O 1.20763 * 111.47519 * 359.97438 * 18 4 3 20 20 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47197 * 300.00888 * 1 2 3 22 22 H 1.09002 * 109.47033 * 60.00095 * 1 2 3 23 23 H 1.07999 * 128.36331 * 359.97438 * 3 2 1 24 24 H 1.07998 * 126.17419 * 359.97438 * 6 5 4 25 25 H 0.97006 * 119.99557 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3112 1.0868 0.0000 4 6 3.6627 0.5067 -0.0006 5 6 4.9470 1.2293 -0.0004 6 6 6.2128 0.6639 -0.0015 7 7 7.0947 1.6527 -0.0014 8 6 6.4436 2.8130 -0.0008 9 6 7.0363 4.0749 0.0000 10 1 6.4193 4.9613 0.0009 11 6 8.4357 4.1935 -0.0002 12 7 9.1816 3.1218 -0.0018 13 14 9.2298 5.8843 0.0016 14 1 8.8071 6.6283 1.2152 15 1 10.7075 5.7371 0.0003 16 1 8.8062 6.6314 -1.2098 17 8 5.1163 2.5697 -0.0064 18 7 3.4786 -0.7965 -0.0015 19 8 2.3040 -1.0771 -0.0010 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 2.0293 2.1293 -0.0004 24 1 6.4393 -0.3921 -0.0023 25 1 10.1482 3.2038 -0.0023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259731354.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:43 Heat of formation + Delta-G solvation = 43.682221 kcal Electronic energy + Delta-G solvation = -13865.284487 eV Core-core repulsion = 11233.596392 eV Total energy + Delta-G solvation = -2631.688095 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.59259 -43.03269 -36.10468 -34.98719 -34.74805 -34.18250 -31.07016 -28.52743 -27.94137 -24.46860 -23.51005 -22.71758 -20.85159 -19.46173 -18.58299 -18.24781 -17.61967 -16.77874 -16.61280 -15.78420 -14.93619 -14.67010 -14.43721 -13.92219 -13.69716 -13.39695 -13.19737 -13.04562 -12.82606 -12.10083 -12.03608 -11.89348 -11.77979 -11.14282 -10.52324 -10.29484 -9.30706 -8.76812 -6.83107 0.16934 0.75356 1.38739 1.38799 1.57401 1.81127 2.03820 2.25285 2.37002 2.37272 3.12777 3.45452 3.76665 4.01857 4.11137 4.44852 4.50756 4.67115 4.79257 4.90007 4.94856 5.00817 5.30911 5.51324 5.70563 5.95360 6.29070 6.49672 7.44474 7.67932 8.18053 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.074971 B = 0.006127 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.387343 B = 4569.022295 C = 4927.264550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.014 4.014 3 C -0.254 4.254 4 C 0.111 3.889 5 C -0.179 4.179 6 C 0.048 3.952 7 N -0.567 5.567 8 C 0.305 3.695 9 C -0.439 4.439 10 H 0.114 0.886 11 C 0.026 3.974 12 N -0.754 5.754 13 Si 1.022 2.978 14 H -0.250 1.250 15 H -0.261 1.261 16 H -0.250 1.250 17 O -0.247 6.247 18 N -0.396 5.396 19 O 0.087 5.913 20 H 0.101 0.899 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.181 0.819 24 H 0.171 0.829 25 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 0.678 0.011 11.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.276 4.276 4 C -0.044 4.044 5 C -0.235 4.235 6 C -0.105 4.105 7 N -0.298 5.298 8 C 0.126 3.874 9 C -0.472 4.472 10 H 0.132 0.868 11 C -0.198 4.198 12 N -0.377 5.377 13 Si 0.838 3.162 14 H -0.173 1.173 15 H -0.185 1.185 16 H -0.174 1.174 17 O -0.144 6.144 18 N -0.107 5.107 19 O 0.023 5.977 20 H 0.120 0.880 21 H 0.127 0.873 22 H 0.127 0.873 23 H 0.198 0.802 24 H 0.188 0.812 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.665 -0.489 0.007 9.678 hybrid contribution -0.322 1.019 -0.003 1.069 sum -9.988 0.530 0.004 10.002 Atomic orbital electron populations 1.20612 0.79504 1.06346 1.05817 1.25111 0.97947 0.84673 0.99897 1.23663 0.89148 1.02004 1.12769 1.21590 0.91850 0.89149 1.01838 1.19562 0.92682 0.81097 1.30132 1.23941 0.88502 0.99926 0.98176 1.71316 1.31189 0.96987 1.30280 1.22883 0.75043 0.96282 0.93156 1.18934 0.93236 0.89124 1.45907 0.86804 1.27290 0.96191 1.04628 0.91702 1.70036 1.07761 1.33304 1.26592 0.84684 0.77097 0.73566 0.80859 1.17349 1.18535 1.17363 1.84401 1.29412 1.23191 1.77410 1.74183 0.96860 1.14750 1.24861 1.84555 1.10573 1.33945 1.68591 0.88006 0.87287 0.87284 0.80152 0.81228 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.44 71.23 0.74 -0.16 15 2 C -0.01 -0.40 7.46 24.98 0.19 -0.21 15 3 C -0.25 -9.03 11.32 23.89 0.27 -8.76 15 4 C 0.11 5.09 7.40 43.90 0.32 5.42 15 5 C -0.18 -9.72 7.37 24.77 0.18 -9.54 15 6 C 0.05 2.67 11.93 84.69 1.01 3.68 15 7 N -0.57 -34.69 9.36 -307.71 -2.88 -37.56 15 8 C 0.30 18.23 7.70 84.79 0.65 18.88 15 9 C -0.44 -23.85 9.44 23.09 0.22 -23.63 15 10 H 0.11 5.56 7.85 -2.91 -0.02 5.54 15 11 C 0.03 1.26 5.50 85.42 0.47 1.73 15 12 N -0.75 -40.33 11.85 21.91 0.26 -40.07 15 13 Si 1.02 35.38 29.56 68.60 2.03 37.41 15 14 H -0.25 -8.19 7.11 99.48 0.71 -7.48 15 15 H -0.26 -8.48 7.11 99.48 0.71 -7.77 15 16 H -0.25 -8.20 7.11 99.48 0.71 -7.49 15 17 O -0.25 -14.18 10.84 -16.97 -0.18 -14.37 15 18 N -0.40 -16.98 12.14 -45.94 -0.56 -17.53 15 19 O 0.09 3.00 11.09 72.25 0.80 3.80 15 20 H 0.10 1.01 8.14 -2.39 -0.02 1.00 15 21 H 0.11 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.11 1.11 8.14 -2.39 -0.02 1.09 15 23 H 0.18 5.70 8.06 -2.91 -0.02 5.68 15 24 H 0.17 8.55 8.06 -2.91 -0.02 8.53 15 25 H 0.30 13.94 8.29 -92.70 -0.77 13.17 15 Total: -1.00 -72.32 241.41 4.75 -67.57 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.22 Total: 13.35 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.06 Total: -12.58 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -3.18 Total: -95.17 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.62 Total: -10.57 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -72.32 4.75 -67.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731354.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.248 kcal (2) G-P(sol) polarization free energy of solvation -72.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds