Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46898 * 2 1 4 4 H 1.08993 * 109.47078 * 304.99686 * 3 2 1 5 5 C 1.53006 * 109.46818 * 64.99936 * 3 2 1 6 6 C 1.50704 * 109.46994 * 184.99734 * 3 2 1 7 7 C 1.38678 * 120.78830 * 300.00522 * 6 3 2 8 8 C 1.38176 * 119.15893 * 179.97438 * 7 6 3 9 9 N 1.31884 * 120.76784 * 359.97438 * 8 7 6 10 10 C 1.31860 * 121.72590 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.61682 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47171 * 304.99760 * 11 10 9 13 13 H 1.08005 * 119.99928 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00018 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99538 * 0.02562 * 14 12 11 16 16 Si 1.86789 * 120.00023 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47452 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47320 * 120.00024 * 16 14 12 19 19 H 1.48502 * 109.47421 * 240.00216 * 16 14 12 20 20 C 1.38220 * 120.76284 * 0.02562 * 10 9 8 21 21 H 1.09000 * 109.47436 * 300.00074 * 1 2 3 22 22 H 1.09011 * 109.47017 * 59.99981 * 1 2 3 23 23 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47080 * 240.00579 * 2 1 3 25 25 H 1.08997 * 109.47001 * 119.99989 * 2 1 3 26 26 H 1.08996 * 109.46842 * 299.99883 * 5 3 2 27 27 H 1.09000 * 109.46870 * 60.00062 * 5 3 2 28 28 H 1.08999 * 109.46367 * 179.97438 * 5 3 2 29 29 H 1.07995 * 120.42098 * 359.94902 * 7 6 3 30 30 H 1.07995 * 119.61795 * 180.02562 * 8 7 6 31 31 H 1.08993 * 109.47371 * 65.00108 * 11 10 9 32 32 H 1.09002 * 109.46919 * 185.00326 * 11 10 9 33 33 H 0.97004 * 119.99672 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.42075 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 3.5419 1.4444 -0.1238 7 6 4.3334 0.8198 0.8284 8 6 5.7071 0.8417 0.6813 9 7 6.2658 1.4463 -0.3490 10 6 5.5448 2.0502 -1.2731 11 6 6.2330 2.7271 -2.4305 12 6 7.2359 3.7222 -1.9062 13 1 7.3626 3.8513 -0.8414 14 6 7.9918 4.4679 -2.7858 15 7 7.8370 4.3110 -4.0823 16 14 9.2354 5.7008 -2.1360 17 1 9.2165 5.6873 -0.6511 18 1 10.5920 5.3363 -2.6176 19 1 8.8860 7.0597 -2.6225 20 6 4.1651 2.0705 -1.1921 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 0.5488 2.1252 1.3969 27 1 2.0698 1.5875 2.1492 28 1 1.9988 3.1541 1.3075 29 1 3.8818 0.3230 1.6743 30 1 6.3305 0.3572 1.4182 31 1 6.7453 1.9796 -3.0361 32 1 5.4929 3.2445 -3.0410 33 1 8.3690 4.8354 -4.7012 34 1 3.5799 2.5664 -1.9524 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259761092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = 2.370894 kcal Electronic energy + Delta-G solvation = -14251.773080 eV Core-core repulsion = 11955.385692 eV Total energy + Delta-G solvation = -2296.387388 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75776 -36.54526 -33.34612 -31.65960 -31.23027 -29.00239 -27.48752 -25.02365 -23.56994 -22.44056 -21.41537 -19.16467 -16.40796 -15.99733 -15.66849 -14.95137 -14.68897 -14.41580 -13.99573 -13.35277 -13.16921 -12.69033 -12.52884 -12.15954 -11.98531 -11.76060 -11.34248 -11.27475 -10.98161 -10.82322 -10.69012 -10.65014 -10.47473 -9.75436 -9.35801 -8.91746 -8.54591 -8.37289 -8.06422 -5.98720 -3.98850 1.86146 1.91584 3.34868 3.41849 3.48318 4.44050 4.57688 4.71031 4.80022 5.01423 5.15389 5.30770 5.35779 5.39545 5.47137 5.53127 5.62622 5.69359 5.80796 5.88136 5.89158 5.97822 6.02066 6.26094 6.29941 6.33466 6.50716 6.65545 6.92653 7.39244 7.57234 7.59389 7.98576 8.35571 8.93917 9.05026 9.63261 11.12713 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.046719 B = 0.005940 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.189246 B = 4712.613865 C = 4848.141985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.051 4.051 4 H 0.078 0.922 5 C -0.143 4.143 6 C -0.040 4.040 7 C -0.202 4.202 8 C 0.096 3.904 9 N -0.476 5.476 10 C 0.176 3.824 11 C 0.057 3.943 12 C -0.497 4.497 13 H 0.060 0.940 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.285 1.285 20 C -0.183 4.183 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 -6.969 8.743 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.070 4.070 4 H 0.097 0.903 5 C -0.200 4.200 6 C -0.048 4.048 7 C -0.222 4.222 8 C -0.062 4.062 9 N -0.186 5.186 10 C 0.039 3.961 11 C 0.020 3.980 12 C -0.535 4.535 13 H 0.078 0.922 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.203 4.203 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.062 -6.899 8.497 16.287 hybrid contribution -0.174 0.679 0.391 0.803 sum -12.236 -6.219 8.888 16.352 Atomic orbital electron populations 1.21833 0.95856 1.01431 1.01903 1.21561 0.95538 0.95786 1.02331 1.20166 0.90970 0.96698 0.99158 0.90336 1.21867 1.00874 1.00752 0.96540 1.20132 0.95097 0.95413 0.94113 1.21690 0.95156 1.04608 1.00792 1.22729 0.92233 0.95725 0.95525 1.67680 1.40812 1.08168 1.01909 1.22267 0.89855 0.89474 0.94472 1.18343 0.95600 0.94863 0.89171 1.21041 1.19685 1.19607 0.93196 0.92203 1.24991 0.97337 0.97430 0.94834 1.69963 1.41196 1.41455 1.01259 0.86448 0.81144 0.80801 0.79130 1.19740 1.20955 1.21097 1.21987 0.96127 1.02824 0.99380 0.92507 0.92709 0.92902 0.91844 0.91837 0.92307 0.92533 0.92480 0.86279 0.83997 0.94086 0.94682 0.92997 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.16 0.36 -0.97 16 2 C -0.11 -1.22 5.16 -26.73 -0.14 -1.36 16 3 C -0.05 -0.63 2.59 -91.76 -0.24 -0.87 16 4 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 5 C -0.14 -1.56 8.77 37.16 0.33 -1.23 16 6 C -0.04 -0.64 4.80 -104.31 -0.50 -1.14 16 7 C -0.20 -3.15 8.89 -39.44 -0.35 -3.50 16 8 C 0.10 1.72 11.18 -17.55 -0.20 1.52 16 9 N -0.48 -10.80 9.96 -9.48 -0.09 -10.89 16 10 C 0.18 4.06 6.13 -82.58 -0.51 3.56 16 11 C 0.06 1.53 5.37 -29.03 -0.16 1.38 16 12 C -0.50 -14.48 8.91 -34.44 -0.31 -14.79 16 13 H 0.06 1.77 7.68 -52.48 -0.40 1.37 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 16 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.18 -3.53 9.36 -39.44 -0.37 -3.90 16 21 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 22 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 26 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 27 H 0.06 0.59 7.48 -51.93 -0.39 0.20 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.12 1.49 7.35 -52.49 -0.39 1.10 16 30 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.03 0.94 7.87 -51.93 -0.41 0.53 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 2.25 7.90 -52.49 -0.41 1.84 16 LS Contribution 284.49 15.07 4.29 4.29 Total: -1.00 -31.24 284.49 -7.43 -38.67 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -5.16 Total: -3.20 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -2.17 Total: -19.81 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.64 Total: -37.19 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.24 -7.43 -38.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.043 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds