Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46898 * 2 1 4 4 H 1.08993 * 109.47078 * 304.99686 * 3 2 1 5 5 C 1.53006 * 109.46818 * 64.99936 * 3 2 1 6 6 C 1.50704 * 109.46994 * 184.99734 * 3 2 1 7 7 C 1.38678 * 120.78830 * 300.00522 * 6 3 2 8 8 C 1.38176 * 119.15893 * 179.97438 * 7 6 3 9 9 N 1.31884 * 120.76784 * 359.97438 * 8 7 6 10 10 C 1.31860 * 121.72590 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.61682 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47171 * 304.99760 * 11 10 9 13 13 H 1.08005 * 119.99928 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00018 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99538 * 0.02562 * 14 12 11 16 16 Si 1.86789 * 120.00023 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47452 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47320 * 120.00024 * 16 14 12 19 19 H 1.48502 * 109.47421 * 240.00216 * 16 14 12 20 20 C 1.38220 * 120.76284 * 0.02562 * 10 9 8 21 21 H 1.09000 * 109.47436 * 300.00074 * 1 2 3 22 22 H 1.09011 * 109.47017 * 59.99981 * 1 2 3 23 23 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47080 * 240.00579 * 2 1 3 25 25 H 1.08997 * 109.47001 * 119.99989 * 2 1 3 26 26 H 1.08996 * 109.46842 * 299.99883 * 5 3 2 27 27 H 1.09000 * 109.46870 * 60.00062 * 5 3 2 28 28 H 1.08999 * 109.46367 * 179.97438 * 5 3 2 29 29 H 1.07995 * 120.42098 * 359.94902 * 7 6 3 30 30 H 1.07995 * 119.61795 * 180.02562 * 8 7 6 31 31 H 1.08993 * 109.47371 * 65.00108 * 11 10 9 32 32 H 1.09002 * 109.46919 * 185.00326 * 11 10 9 33 33 H 0.97004 * 119.99672 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.42075 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 3.5419 1.4444 -0.1238 7 6 4.3334 0.8198 0.8284 8 6 5.7071 0.8417 0.6813 9 7 6.2658 1.4463 -0.3490 10 6 5.5448 2.0502 -1.2731 11 6 6.2330 2.7271 -2.4305 12 6 7.2359 3.7222 -1.9062 13 1 7.3626 3.8513 -0.8414 14 6 7.9918 4.4679 -2.7858 15 7 7.8370 4.3110 -4.0823 16 14 9.2354 5.7008 -2.1360 17 1 9.2165 5.6873 -0.6511 18 1 10.5920 5.3363 -2.6176 19 1 8.8860 7.0597 -2.6225 20 6 4.1651 2.0705 -1.1921 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 0.5488 2.1252 1.3969 27 1 2.0698 1.5875 2.1492 28 1 1.9988 3.1541 1.3075 29 1 3.8818 0.3230 1.6743 30 1 6.3305 0.3572 1.4182 31 1 6.7453 1.9796 -3.0361 32 1 5.4929 3.2445 -3.0410 33 1 8.3690 4.8354 -4.7012 34 1 3.5799 2.5664 -1.9524 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259761092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = -15.706830 kcal Electronic energy + Delta-G solvation = -14252.556989 eV Core-core repulsion = 11955.385692 eV Total energy + Delta-G solvation = -2297.171297 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19999 -37.64552 -35.40729 -33.07248 -32.83951 -29.95467 -29.38863 -26.16509 -25.34294 -23.84843 -22.72722 -20.41298 -18.55143 -17.35713 -17.15429 -16.59697 -16.12152 -15.62035 -15.18080 -14.80519 -14.42418 -14.15063 -13.93835 -13.65974 -13.25524 -13.00752 -12.89159 -12.65368 -12.60560 -12.38183 -11.96419 -11.80265 -11.65219 -11.51342 -11.41804 -10.64494 -10.30307 -10.04102 -9.67498 -8.21840 -6.31129 0.37327 0.50508 1.37737 1.38962 1.52711 2.40121 3.01375 3.12240 3.62316 3.69863 3.83247 4.15878 4.21794 4.31633 4.39897 4.46323 4.60912 4.69142 4.77190 4.92081 4.94930 5.05097 5.10319 5.14470 5.18755 5.23868 5.29772 5.36013 5.49396 5.56008 5.62404 5.72073 5.98363 6.17594 6.77620 7.33783 7.40925 8.89888 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.046719 B = 0.005940 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.189246 B = 4712.613865 C = 4848.141985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.050 4.050 4 H 0.076 0.924 5 C -0.140 4.140 6 C -0.030 4.030 7 C -0.181 4.181 8 C 0.085 3.915 9 N -0.520 5.520 10 C 0.140 3.860 11 C 0.065 3.935 12 C -0.516 4.516 13 H 0.049 0.951 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.272 1.272 20 C -0.193 4.193 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.164 0.836 30 H 0.175 0.825 31 H 0.006 0.994 32 H 0.019 0.981 33 H 0.266 0.734 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.448 -7.380 11.139 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.068 4.068 4 H 0.095 0.905 5 C -0.197 4.197 6 C -0.039 4.039 7 C -0.201 4.201 8 C -0.072 4.072 9 N -0.230 5.230 10 C 0.004 3.996 11 C 0.028 3.972 12 C -0.554 4.554 13 H 0.067 0.933 14 C -0.195 4.195 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.197 1.197 20 C -0.213 4.213 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.181 0.819 30 H 0.192 0.808 31 H 0.024 0.976 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.488 -7.314 10.890 18.815 hybrid contribution 0.187 0.717 -0.298 0.799 sum -13.301 -6.596 10.592 18.238 Atomic orbital electron populations 1.21813 0.94167 1.02318 1.02426 1.21544 0.96979 0.94105 1.02263 1.20259 0.87980 0.98351 1.00252 0.90533 1.21867 1.02497 0.99766 0.95612 1.20573 0.97430 0.93368 0.92480 1.22128 0.94109 1.02642 1.01178 1.23307 0.94091 0.95104 0.94719 1.67492 1.42447 1.09675 1.03373 1.21709 0.91254 0.92086 0.94541 1.18038 0.94843 0.93872 0.90447 1.21270 1.20754 1.20646 0.92765 0.93301 1.25901 0.99269 0.99330 0.95025 1.70075 1.42205 1.42454 1.02473 0.85356 0.78495 0.78446 0.78475 1.19462 1.20057 1.19746 1.22013 0.94671 1.03637 1.00942 0.91301 0.92903 0.91895 0.93153 0.90703 0.89989 0.91472 0.93844 0.81853 0.80845 0.97552 0.96242 0.92532 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 71.98 0.70 -1.39 16 2 C -0.11 -2.00 5.16 30.60 0.16 -1.84 16 3 C -0.05 -1.10 2.59 -11.53 -0.03 -1.13 16 4 H 0.08 1.73 7.94 -2.39 -0.02 1.71 16 5 C -0.14 -2.54 8.77 71.98 0.63 -1.91 16 6 C -0.03 -0.92 4.80 -19.67 -0.09 -1.02 16 7 C -0.18 -5.09 8.89 22.36 0.20 -4.90 16 8 C 0.09 2.93 11.18 84.67 0.95 3.88 16 9 N -0.52 -24.05 9.96 -183.89 -1.83 -25.88 16 10 C 0.14 6.75 6.13 42.55 0.26 7.01 16 11 C 0.07 3.73 5.37 29.10 0.16 3.89 16 12 C -0.52 -31.40 8.91 25.60 0.23 -31.17 16 13 H 0.05 3.00 7.68 -2.91 -0.02 2.98 16 14 C 0.00 0.14 5.46 84.66 0.46 0.60 16 15 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 16 Si 0.97 46.40 29.54 68.60 2.03 48.42 16 17 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 C -0.19 -7.58 9.36 22.36 0.21 -7.37 16 21 H 0.07 0.80 6.56 -2.39 -0.02 0.79 16 22 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.07 1.19 7.67 -2.39 -0.02 1.17 16 26 H 0.08 1.13 6.56 -2.39 -0.02 1.12 16 27 H 0.07 1.08 7.48 -2.39 -0.02 1.06 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.16 3.18 7.35 -2.91 -0.02 3.16 16 30 H 0.17 4.68 8.06 -2.91 -0.02 4.65 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.02 1.12 7.87 -2.39 -0.02 1.10 16 33 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 34 H 0.13 4.80 7.90 -2.91 -0.02 4.78 16 Total: -1.00 -70.54 284.49 5.36 -65.18 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.06 Total: 5.09 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 3.82 Total: -35.33 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.55 Total: -83.36 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -70.54 5.36 -65.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.476 kcal (2) G-P(sol) polarization free energy of solvation -70.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds