Wall clock time and date at job start Mon Mar 30 2020 02:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.41675 * 2 1 4 4 C 1.53012 * 109.41035 * 240.14384 * 2 1 3 5 5 C 1.53457 * 109.79704 * 167.87107 * 4 2 1 6 6 C 1.50796 * 108.06358 * 50.76847 * 5 4 2 7 7 C 1.33973 * 128.94597 * 163.19706 * 6 5 4 8 8 N 1.36657 * 108.05390 * 180.36266 * 7 6 5 9 9 C 1.46498 * 125.60002 * 179.97438 * 8 7 6 10 10 C 1.36659 * 108.80072 * 359.93529 * 8 7 6 11 11 C 1.33978 * 108.05469 * 359.94698 * 10 8 7 12 12 C 1.50793 * 128.94914 * 180.20610 * 11 10 8 13 13 H 1.08999 * 109.72833 * 283.11329 * 12 11 10 14 14 C 1.50696 * 109.73289 * 43.79640 * 12 11 10 15 15 H 1.08007 * 120.00090 * 63.74662 * 14 12 11 16 16 C 1.37878 * 120.00084 * 243.74794 * 14 12 11 17 17 N 1.31518 * 119.99849 * 5.94235 * 16 14 12 18 18 Si 1.86800 * 119.99972 * 185.94759 * 16 14 12 19 19 H 1.48501 * 109.47466 * 89.99615 * 18 16 14 20 20 H 1.48504 * 109.46860 * 209.99730 * 18 16 14 21 21 H 1.48508 * 109.47222 * 329.99568 * 18 16 14 22 22 H 1.09002 * 109.46857 * 299.99940 * 1 2 3 23 23 H 1.08996 * 109.47552 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47222 * 59.99178 * 1 2 3 25 25 H 1.08995 * 109.41565 * 288.05356 * 4 2 1 26 26 H 1.09004 * 109.40887 * 47.84238 * 4 2 1 27 27 H 1.08994 * 109.80736 * 291.10594 * 5 4 2 28 28 H 1.09002 * 109.75212 * 170.40011 * 5 4 2 29 29 H 1.08003 * 125.97346 * 0.37049 * 7 6 5 30 30 H 1.08999 * 109.47445 * 89.97975 * 9 8 7 31 31 H 1.09001 * 109.47564 * 209.97977 * 9 8 7 32 32 H 1.09001 * 109.47179 * 329.98194 * 9 8 7 33 33 H 1.07997 * 125.96954 * 179.97438 * 10 8 7 34 34 H 0.97004 * 119.99381 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 6 2.0385 -0.7184 -1.2516 5 6 3.5426 -0.4658 -1.4209 6 6 4.2207 -0.7856 -0.1125 7 6 5.5193 -1.0077 0.1309 8 7 5.6620 -1.2662 1.4652 9 6 6.9248 -1.5622 2.1462 10 6 4.4333 -1.2023 2.0600 11 6 3.5297 -0.9070 1.1159 12 6 2.0398 -0.7205 1.2549 13 1 1.5542 -1.6922 1.3444 14 6 1.7430 0.1119 2.4755 15 1 2.0855 1.1349 2.5279 16 6 1.0341 -0.4323 3.5254 17 7 0.7182 -1.7090 3.5139 18 14 0.5221 0.6436 4.9641 19 1 -0.8140 1.2316 4.6917 20 1 0.4587 -0.1787 6.1991 21 1 1.5149 1.7331 5.1453 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 1.8585 -1.7889 -1.1533 26 1 1.5081 -0.3417 -2.1262 27 1 3.7149 0.5791 -1.6789 28 1 3.9380 -1.1090 -2.2071 29 1 6.3144 -0.9861 -0.5997 30 1 7.3764 -0.6333 2.4942 31 1 6.7339 -2.2149 2.9981 32 1 7.6037 -2.0589 1.4530 33 1 4.2268 -1.3616 3.1080 34 1 0.2198 -2.0919 4.2527 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259785494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:20 Heat of formation + Delta-G solvation = 31.116985 kcal Electronic energy + Delta-G solvation = -15143.680398 eV Core-core repulsion = 12848.539534 eV Total energy + Delta-G solvation = -2295.140864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.41587 -36.40680 -32.84297 -31.75963 -30.34883 -27.87664 -26.67307 -24.73528 -23.67285 -21.44583 -19.54575 -18.94844 -17.35690 -16.34695 -15.71445 -14.56302 -14.42575 -13.72400 -13.23003 -13.09412 -12.79924 -12.30197 -12.05362 -11.94098 -11.87248 -11.24554 -10.94796 -10.91547 -10.86235 -10.63857 -10.43826 -10.05248 -9.71330 -9.44691 -9.06539 -8.60201 -8.37280 -7.25946 -6.94166 -5.88886 -3.90124 3.17114 3.34880 3.42051 3.45643 3.77254 4.14623 4.53870 5.17591 5.38513 5.51213 5.67285 5.71983 5.84657 5.87523 5.94462 6.27220 6.39091 6.48283 6.52978 6.59342 6.79276 6.86654 6.92007 7.05883 7.19604 7.35306 7.43260 7.57249 7.74255 7.95437 8.06691 8.18121 8.31481 8.40335 8.67268 9.22063 9.70595 11.18059 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.023527 B = 0.012278 C = 0.008722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.849818 B = 2279.926263 C = 3209.474298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 H 0.050 0.950 4 C -0.110 4.110 5 C -0.037 4.037 6 C -0.180 4.180 7 C -0.036 4.036 8 N -0.474 5.474 9 C 0.085 3.915 10 C -0.009 4.009 11 C -0.111 4.111 12 C 0.097 3.903 13 H 0.073 0.927 14 C -0.492 4.492 15 H 0.050 0.950 16 C 0.065 3.935 17 N -0.894 5.894 18 Si 0.882 3.118 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.275 1.275 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.025 0.975 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.144 0.856 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.531 0.303 -5.410 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.148 4.148 5 C -0.075 4.075 6 C -0.188 4.188 7 C -0.163 4.163 8 N -0.154 5.154 9 C -0.058 4.058 10 C -0.134 4.134 11 C -0.117 4.117 12 C 0.078 3.922 13 H 0.091 0.909 14 C -0.530 4.530 15 H 0.068 0.932 16 C -0.136 4.136 17 N -0.533 5.533 18 Si 0.710 3.290 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.200 1.200 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.753 0.082 -5.101 9.281 hybrid contribution -0.098 0.564 0.979 1.134 sum 7.655 0.646 -4.122 8.718 Atomic orbital electron populations 1.21628 0.96510 1.00602 0.99739 1.21231 0.94482 0.98895 0.95027 0.93182 1.21653 0.94419 1.00675 0.98018 1.19913 0.95098 0.99340 0.93153 1.19541 0.92748 1.10317 0.96181 1.20940 0.97369 1.13097 0.84919 1.43942 1.06626 1.57528 1.07281 1.21742 0.85132 1.01005 0.97906 1.21307 0.82255 1.10995 0.98886 1.20327 0.98070 1.02710 0.90606 1.17652 0.85754 0.97620 0.91164 0.90937 1.21023 1.33332 0.97939 1.00703 0.93158 1.24936 0.96056 0.94690 0.97890 1.69931 1.40264 1.11020 1.32120 0.86766 0.79138 0.80726 0.82387 1.20711 1.21502 1.20046 0.92070 0.93820 0.95560 0.92673 0.93768 0.92693 0.93080 0.83885 0.92272 0.90686 0.91167 0.82701 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.01 37.16 0.33 -2.36 16 2 C -0.08 -1.72 2.10 -90.40 -0.19 -1.91 16 3 H 0.05 1.14 8.07 -51.93 -0.42 0.72 16 4 C -0.11 -2.11 5.17 -26.49 -0.14 -2.25 16 5 C -0.04 -0.68 6.30 -27.60 -0.17 -0.85 16 6 C -0.18 -3.75 5.91 -104.85 -0.62 -4.37 16 7 C -0.04 -0.66 11.41 -16.90 -0.19 -0.86 16 8 N -0.47 -8.84 3.16 -124.84 -0.39 -9.24 16 9 C 0.08 1.12 11.12 59.85 0.67 1.78 16 10 C -0.01 -0.20 10.99 -16.90 -0.19 -0.39 16 11 C -0.11 -2.65 5.43 -104.85 -0.57 -3.22 16 12 C 0.10 2.47 2.20 -92.66 -0.20 2.27 16 13 H 0.07 2.08 6.97 -51.93 -0.36 1.71 16 14 C -0.49 -13.47 7.23 -34.44 -0.25 -13.72 16 15 H 0.05 1.41 7.82 -52.48 -0.41 1.00 16 16 C 0.06 1.79 5.45 -17.82 -0.10 1.70 16 17 N -0.89 -25.74 12.65 55.43 0.70 -25.04 16 18 Si 0.88 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.06 1.40 7.56 -51.93 -0.39 1.00 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 26 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.16 3.59 8.06 -52.49 -0.42 3.16 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 277.00 15.07 4.17 4.17 Total: -1.00 -29.89 277.00 -7.52 -37.41 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.36 Total: 0.51 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -1.62 Total: -24.17 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.31 Total: -34.28 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.89 -7.52 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.530 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds