Wall clock time and date at job start Mon Mar 30 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.41197 * 2 1 4 4 C 1.53004 * 109.41035 * 240.14465 * 2 1 3 5 5 C 1.53427 * 109.81114 * 167.99374 * 4 2 1 6 6 C 1.50799 * 108.11122 * 50.64504 * 5 4 2 7 7 C 1.33971 * 128.94383 * 163.33123 * 6 5 4 8 8 N 1.36662 * 108.05302 * 180.34929 * 7 6 5 9 9 C 1.46497 * 125.60049 * 179.91396 * 8 7 6 10 10 C 1.36662 * 108.79852 * 359.93351 * 8 7 6 11 11 C 1.33975 * 108.05604 * 359.94917 * 10 8 7 12 12 C 1.50787 * 128.94722 * 180.32688 * 11 10 8 13 13 H 1.08998 * 109.73424 * 43.72586 * 12 11 10 14 14 C 1.50703 * 109.73561 * 283.03136 * 12 11 10 15 15 H 1.07997 * 119.99873 * 294.94777 * 14 12 11 16 16 C 1.37876 * 119.99820 * 114.93799 * 14 12 11 17 17 N 1.31516 * 120.00026 * 173.76942 * 16 14 12 18 18 Si 1.86807 * 119.99963 * 353.76872 * 16 14 12 19 19 H 1.48494 * 109.47024 * 86.19787 * 18 16 14 20 20 H 1.48504 * 109.47188 * 206.20082 * 18 16 14 21 21 H 1.48504 * 109.47156 * 326.19750 * 18 16 14 22 22 H 1.09002 * 109.46978 * 179.85432 * 1 2 3 23 23 H 1.08994 * 109.47299 * 299.85641 * 1 2 3 24 24 H 1.09005 * 109.47047 * 59.85468 * 1 2 3 25 25 H 1.09001 * 109.41840 * 47.89480 * 4 2 1 26 26 H 1.08994 * 109.41875 * 288.09905 * 4 2 1 27 27 H 1.09002 * 109.73354 * 290.99321 * 5 4 2 28 28 H 1.08998 * 109.77772 * 170.32257 * 5 4 2 29 29 H 1.07999 * 125.97741 * 0.60416 * 7 6 5 30 30 H 1.08999 * 109.46955 * 90.02165 * 9 8 7 31 31 H 1.09002 * 109.47220 * 210.02136 * 9 8 7 32 32 H 1.08999 * 109.47472 * 330.02398 * 9 8 7 33 33 H 1.08000 * 125.96921 * 179.91399 * 10 8 7 34 34 H 0.96997 * 119.99918 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8923 1.0281 0.0000 4 6 2.0385 -0.7184 -1.2516 5 6 3.5430 -0.4685 -1.4194 6 6 4.2201 -0.7873 -0.1103 7 6 5.5186 -1.0084 0.1343 8 7 5.6604 -1.2659 1.4689 9 6 6.9226 -1.5619 2.1510 10 6 4.4311 -1.2023 2.0627 11 6 3.5282 -0.9081 1.1176 12 6 2.0385 -0.7200 1.2558 13 1 1.8239 -0.1169 2.1380 14 6 1.3654 -2.0626 1.3802 15 1 1.3923 -2.7587 0.5549 16 6 0.7155 -2.4024 2.5477 17 7 0.0249 -3.5196 2.6148 18 14 0.8158 -1.2757 4.0344 19 1 -0.2444 -0.2399 3.9430 20 1 0.6242 -2.0722 5.2730 21 1 2.1474 -0.6193 4.0691 22 1 -0.3633 -1.0277 -0.0026 23 1 -0.3633 0.5116 0.8912 24 1 -0.3633 0.5161 -0.8887 25 1 1.5089 -0.3411 -2.1263 26 1 1.8578 -1.7888 -1.1536 27 1 3.7159 0.5760 -1.6785 28 1 3.9385 -1.1127 -2.2047 29 1 6.3148 -0.9832 -0.5950 30 1 7.3740 -0.6329 2.4991 31 1 6.7310 -2.2144 3.0029 32 1 7.6021 -2.0588 1.4584 33 1 4.2238 -1.3618 3.1105 34 1 -0.4320 -3.7588 3.4363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259785499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:22 Heat of formation + Delta-G solvation = 35.257458 kcal Electronic energy + Delta-G solvation = -15270.374029 eV Core-core repulsion = 12975.412709 eV Total energy + Delta-G solvation = -2294.961320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59421 -36.65505 -32.69010 -31.83098 -30.70563 -28.06045 -26.91272 -24.92375 -23.56296 -21.58127 -19.51902 -19.20022 -17.71602 -16.28495 -15.98785 -14.69913 -14.10139 -13.98454 -13.36916 -13.16063 -12.88306 -12.50808 -12.43705 -12.18428 -11.80848 -11.50209 -11.09538 -11.04901 -10.80691 -10.52417 -10.39600 -10.22242 -9.66788 -9.50819 -8.97187 -8.86716 -8.43253 -7.37923 -7.10651 -5.95810 -3.89194 3.02203 3.33932 3.42310 3.44550 3.63433 3.97420 4.51402 5.07962 5.38008 5.40882 5.57336 5.61924 5.74625 5.84392 5.91443 6.03363 6.30964 6.40001 6.42328 6.56523 6.70330 6.76225 6.87018 6.90699 6.97228 7.20996 7.22384 7.43869 7.52655 7.56986 7.92294 7.97111 8.14952 8.20356 8.70080 9.12247 9.68669 11.17922 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.013692 C = 0.009871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.668532 B = 2044.527598 C = 2835.904492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 H 0.039 0.961 4 C -0.103 4.103 5 C -0.039 4.039 6 C -0.169 4.169 7 C -0.028 4.028 8 N -0.471 5.471 9 C 0.084 3.916 10 C -0.028 4.028 11 C -0.109 4.109 12 C 0.077 3.923 13 H 0.035 0.965 14 C -0.479 4.479 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.905 5.905 18 Si 0.870 3.130 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.266 1.266 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.027 0.973 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.147 0.853 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 6.090 -3.169 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 H 0.057 0.943 4 C -0.141 4.141 5 C -0.077 4.077 6 C -0.177 4.177 7 C -0.156 4.156 8 N -0.150 5.150 9 C -0.059 4.059 10 C -0.154 4.154 11 C -0.115 4.115 12 C 0.057 3.943 13 H 0.054 0.946 14 C -0.517 4.517 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.544 5.544 18 Si 0.698 3.302 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.191 1.191 22 H 0.093 0.907 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.165 0.835 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.167 0.833 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.928 5.888 -2.851 11.890 hybrid contribution 0.204 0.367 1.056 1.136 sum 10.132 6.255 -1.796 12.042 Atomic orbital electron populations 1.21715 0.95932 1.02863 0.98441 1.21103 0.95032 0.96836 0.96269 0.94264 1.21517 0.93637 1.02194 0.96727 1.19950 0.95520 0.99177 0.93060 1.19436 0.92416 1.09795 0.96020 1.21003 0.97508 1.12336 0.84765 1.43871 1.06447 1.57375 1.07320 1.21771 0.85031 1.01009 0.98051 1.21191 0.83098 1.12473 0.98643 1.20124 0.96764 1.03034 0.91618 1.17892 0.86725 0.96311 0.93358 0.94647 1.20843 1.30540 0.99427 1.00854 0.90731 1.25031 0.94964 0.94973 0.98168 1.69904 1.33120 1.24072 1.27340 0.86980 0.79019 0.81088 0.83094 1.20301 1.21998 1.19145 0.90656 0.94253 0.95356 0.93798 0.90943 0.92816 0.92781 0.83521 0.92211 0.90630 0.90884 0.83336 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.76 37.16 0.33 -2.41 16 2 C -0.07 -1.56 2.43 -90.40 -0.22 -1.78 16 3 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 4 C -0.10 -2.02 5.14 -26.51 -0.14 -2.15 16 5 C -0.04 -0.70 6.30 -27.61 -0.17 -0.88 16 6 C -0.17 -3.41 5.92 -104.85 -0.62 -4.03 16 7 C -0.03 -0.51 11.41 -16.90 -0.19 -0.70 16 8 N -0.47 -8.39 3.16 -124.84 -0.39 -8.78 16 9 C 0.08 1.04 11.12 59.85 0.67 1.70 16 10 C -0.03 -0.60 11.41 -16.90 -0.19 -0.80 16 11 C -0.11 -2.49 5.17 -104.85 -0.54 -3.03 16 12 C 0.08 1.85 2.17 -92.66 -0.20 1.65 16 13 H 0.04 0.88 4.89 -51.93 -0.25 0.63 16 14 C -0.48 -13.22 6.81 -34.44 -0.23 -13.46 16 15 H 0.07 2.27 6.98 -52.49 -0.37 1.91 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 17 N -0.91 -27.57 13.96 55.43 0.77 -26.80 16 18 Si 0.87 21.67 26.94 -169.99 -4.58 17.09 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 21 H -0.27 -6.37 6.82 56.52 0.39 -5.98 16 22 H 0.07 1.74 7.01 -51.93 -0.36 1.38 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.75 8.09 -51.93 -0.42 0.33 16 26 H 0.07 1.60 6.63 -51.93 -0.34 1.25 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.15 3.11 8.06 -52.49 -0.42 2.69 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 270.30 15.07 4.07 4.07 Total: -1.00 -31.12 270.30 -6.87 -37.99 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.13 Total: 0.44 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -1.62 Total: -24.02 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.38 Total: -35.58 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.58 Total: 17.09 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.12 -6.87 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.251 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds