Wall clock time and date at job start Mon Mar 30 2020 02:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.41197 * 2 1 4 4 C 1.53004 * 109.41035 * 240.14465 * 2 1 3 5 5 C 1.53427 * 109.81114 * 167.99374 * 4 2 1 6 6 C 1.50799 * 108.11122 * 50.64504 * 5 4 2 7 7 C 1.33971 * 128.94383 * 163.33123 * 6 5 4 8 8 N 1.36662 * 108.05302 * 180.34929 * 7 6 5 9 9 C 1.46497 * 125.60049 * 179.91396 * 8 7 6 10 10 C 1.36662 * 108.79852 * 359.93351 * 8 7 6 11 11 C 1.33975 * 108.05604 * 359.94917 * 10 8 7 12 12 C 1.50787 * 128.94722 * 180.32688 * 11 10 8 13 13 H 1.08998 * 109.73424 * 43.72586 * 12 11 10 14 14 C 1.50703 * 109.73561 * 283.03136 * 12 11 10 15 15 H 1.07997 * 119.99873 * 294.94777 * 14 12 11 16 16 C 1.37876 * 119.99820 * 114.93799 * 14 12 11 17 17 N 1.31516 * 120.00026 * 173.76942 * 16 14 12 18 18 Si 1.86807 * 119.99963 * 353.76872 * 16 14 12 19 19 H 1.48494 * 109.47024 * 86.19787 * 18 16 14 20 20 H 1.48504 * 109.47188 * 206.20082 * 18 16 14 21 21 H 1.48504 * 109.47156 * 326.19750 * 18 16 14 22 22 H 1.09002 * 109.46978 * 179.85432 * 1 2 3 23 23 H 1.08994 * 109.47299 * 299.85641 * 1 2 3 24 24 H 1.09005 * 109.47047 * 59.85468 * 1 2 3 25 25 H 1.09001 * 109.41840 * 47.89480 * 4 2 1 26 26 H 1.08994 * 109.41875 * 288.09905 * 4 2 1 27 27 H 1.09002 * 109.73354 * 290.99321 * 5 4 2 28 28 H 1.08998 * 109.77772 * 170.32257 * 5 4 2 29 29 H 1.07999 * 125.97741 * 0.60416 * 7 6 5 30 30 H 1.08999 * 109.46955 * 90.02165 * 9 8 7 31 31 H 1.09002 * 109.47220 * 210.02136 * 9 8 7 32 32 H 1.08999 * 109.47472 * 330.02398 * 9 8 7 33 33 H 1.08000 * 125.96921 * 179.91399 * 10 8 7 34 34 H 0.96997 * 119.99918 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8923 1.0281 0.0000 4 6 2.0385 -0.7184 -1.2516 5 6 3.5430 -0.4685 -1.4194 6 6 4.2201 -0.7873 -0.1103 7 6 5.5186 -1.0084 0.1343 8 7 5.6604 -1.2659 1.4689 9 6 6.9226 -1.5619 2.1510 10 6 4.4311 -1.2023 2.0627 11 6 3.5282 -0.9081 1.1176 12 6 2.0385 -0.7200 1.2558 13 1 1.8239 -0.1169 2.1380 14 6 1.3654 -2.0626 1.3802 15 1 1.3923 -2.7587 0.5549 16 6 0.7155 -2.4024 2.5477 17 7 0.0249 -3.5196 2.6148 18 14 0.8158 -1.2757 4.0344 19 1 -0.2444 -0.2399 3.9430 20 1 0.6242 -2.0722 5.2730 21 1 2.1474 -0.6193 4.0691 22 1 -0.3633 -1.0277 -0.0026 23 1 -0.3633 0.5116 0.8912 24 1 -0.3633 0.5161 -0.8887 25 1 1.5089 -0.3411 -2.1263 26 1 1.8578 -1.7888 -1.1536 27 1 3.7159 0.5760 -1.6785 28 1 3.9385 -1.1127 -2.2047 29 1 6.3148 -0.9832 -0.5950 30 1 7.3740 -0.6329 2.4991 31 1 6.7310 -2.2144 3.0029 32 1 7.6021 -2.0588 1.4584 33 1 4.2238 -1.3618 3.1105 34 1 -0.4320 -3.7588 3.4363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259785499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:21 Heat of formation + Delta-G solvation = 17.392067 kcal Electronic energy + Delta-G solvation = -15271.148731 eV Core-core repulsion = 12975.412709 eV Total energy + Delta-G solvation = -2295.736021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.06464 -38.28486 -34.64152 -33.32611 -32.39925 -29.57556 -28.57235 -26.46541 -25.32256 -23.13130 -21.16335 -20.70608 -19.59059 -18.15025 -17.41072 -16.12040 -15.97463 -15.56129 -14.85035 -14.65186 -14.58309 -14.35213 -13.99553 -13.47155 -13.24227 -13.02430 -12.76347 -12.71761 -12.61084 -12.20186 -12.06593 -11.89569 -11.72115 -11.15682 -10.83532 -10.62967 -10.59509 -8.80280 -8.71193 -8.17813 -6.13365 1.33585 1.35119 1.46280 1.58993 2.34156 2.36981 2.40989 3.21455 4.02365 4.23758 4.30470 4.33580 4.37446 4.52042 4.52570 4.72451 4.76537 4.88273 4.93695 5.00206 5.02033 5.16634 5.27260 5.31933 5.37334 5.51214 5.58441 5.66079 5.83415 5.94020 5.97576 6.37226 6.52787 6.57001 6.83953 6.90255 7.46850 8.99808 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.013692 C = 0.009871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.668532 B = 2044.527598 C = 2835.904492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.075 4.075 3 H 0.058 0.942 4 C -0.100 4.100 5 C -0.034 4.034 6 C -0.199 4.199 7 C -0.011 4.011 8 N -0.467 5.467 9 C 0.075 3.925 10 C -0.048 4.048 11 C -0.149 4.149 12 C 0.074 3.926 13 H 0.025 0.975 14 C -0.462 4.462 15 H 0.030 0.970 16 C 0.011 3.989 17 N -0.956 5.956 18 Si 0.930 3.070 19 H -0.269 1.269 20 H -0.293 1.293 21 H -0.251 1.251 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.190 0.810 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.182 8.044 -3.870 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.137 4.137 5 C -0.071 4.071 6 C -0.207 4.207 7 C -0.140 4.140 8 N -0.145 5.145 9 C -0.066 4.066 10 C -0.176 4.176 11 C -0.155 4.155 12 C 0.054 3.946 13 H 0.043 0.957 14 C -0.501 4.501 15 H 0.048 0.952 16 C -0.184 4.184 17 N -0.598 5.598 18 Si 0.756 3.244 19 H -0.194 1.194 20 H -0.220 1.220 21 H -0.176 1.176 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.207 0.793 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.160 0.840 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.421 7.857 -3.553 15.120 hybrid contribution -0.481 -0.281 1.200 1.324 sum 11.939 7.576 -2.352 14.334 Atomic orbital electron populations 1.21654 0.96012 1.00914 0.99928 1.21098 0.95007 0.97554 0.95701 0.92370 1.21453 0.95823 0.99564 0.96881 1.19967 0.93569 1.00963 0.92630 1.19775 0.93502 1.11403 0.95975 1.21620 0.97738 1.09381 0.85228 1.44174 1.06969 1.55772 1.07568 1.22145 0.83082 1.02631 0.98707 1.21190 0.84856 1.13095 0.98414 1.20127 0.96073 1.05516 0.93825 1.17835 0.88233 0.94054 0.94460 0.95692 1.20934 1.29799 1.00245 0.99095 0.95207 1.25769 0.94996 0.96481 1.01182 1.70057 1.35139 1.26472 1.28146 0.85999 0.79840 0.79302 0.79297 1.19435 1.22007 1.17552 0.94245 0.94675 0.91939 0.91157 0.94783 0.90484 0.90953 0.79279 0.90007 0.90231 0.88048 0.84021 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.76 71.98 0.63 -4.64 16 2 C -0.07 -3.12 2.43 -10.65 -0.03 -3.15 16 3 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 4 C -0.10 -3.80 5.14 30.74 0.16 -3.64 16 5 C -0.03 -1.11 6.30 30.02 0.19 -0.92 16 6 C -0.20 -7.63 5.92 -20.01 -0.12 -7.75 16 7 C -0.01 -0.34 11.41 82.97 0.95 0.61 16 8 N -0.47 -15.32 3.16 -548.87 -1.74 -17.05 16 9 C 0.07 1.56 11.12 127.77 1.42 2.98 16 10 C -0.05 -2.00 11.41 82.97 0.95 -1.06 16 11 C -0.15 -6.71 5.17 -20.01 -0.10 -6.82 16 12 C 0.07 3.59 2.17 -12.12 -0.03 3.57 16 13 H 0.03 1.25 4.89 -2.39 -0.01 1.23 16 14 C -0.46 -26.70 6.81 25.60 0.17 -26.53 16 15 H 0.03 1.94 6.98 -2.91 -0.02 1.92 16 16 C 0.01 0.64 5.47 84.65 0.46 1.10 16 17 N -0.96 -61.00 13.96 21.45 0.30 -60.70 16 18 Si 0.93 45.82 26.94 68.60 1.85 47.67 16 19 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.25 -11.65 6.82 99.48 0.68 -10.97 16 22 H 0.04 1.88 7.01 -2.39 -0.02 1.86 16 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 25 H 0.07 2.26 8.09 -2.39 -0.02 2.24 16 26 H 0.03 1.54 6.63 -2.39 -0.02 1.52 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.19 4.34 8.06 -2.91 -0.02 4.31 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.14 5.94 8.06 -2.91 -0.02 5.91 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -70.73 270.30 6.10 -64.63 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.04 Total: 11.70 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 4.65 Total: -46.25 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.44 Total: -77.76 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.85 Total: 47.67 kcal Total: -70.73 6.10 -64.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259785499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.023 kcal (2) G-P(sol) polarization free energy of solvation -70.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds