Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00261 * 2 1 4 4 H 1.48498 * 109.47037 * 239.99994 * 3 2 1 5 5 H 1.48501 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47391 * 119.99892 * 3 2 1 7 7 C 1.37883 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00472 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99560 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47166 * 179.97438 * 9 7 2 11 11 N 1.28163 * 124.23428 * 90.02490 * 10 9 7 12 12 C 1.34145 * 117.79545 * 180.02562 * 11 10 9 13 13 C 1.41219 * 130.84364 * 179.97438 * 12 11 10 14 14 C 1.36190 * 119.27804 * 180.02562 * 13 12 11 15 15 N 1.32254 * 121.66179 * 359.97438 * 14 13 12 16 16 C 1.31663 * 121.91028 * 0.28881 * 15 14 13 17 17 C 1.39011 * 120.40958 * 359.48255 * 16 15 14 18 18 S 1.70698 * 124.23809 * 270.02879 * 10 9 7 19 19 H 0.96996 * 119.99877 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47236 * 60.00335 * 9 7 2 21 21 H 1.08994 * 109.47432 * 300.00113 * 9 7 2 22 22 H 1.07995 * 120.35912 * 359.97438 * 13 12 11 23 23 H 1.08004 * 119.16515 * 179.97438 * 14 13 12 24 24 H 1.08006 * 119.79326 * 179.67721 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 7 2.6992 -4.1935 1.0572 12 6 3.5657 -5.2062 0.9056 13 6 4.2408 -5.9952 1.8627 14 6 5.0830 -6.9787 1.4407 15 7 5.2853 -7.2152 0.1553 16 6 4.6894 -6.5110 -0.7841 17 6 3.8089 -5.4897 -0.4462 18 16 2.8538 -4.3736 -1.4138 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 4.0915 -5.8199 2.9179 23 1 5.5987 -7.5807 2.1743 24 1 4.8836 -6.7301 -1.8237 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259801992.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = 55.320984 kcal Electronic energy + Delta-G solvation = -11770.575329 eV Core-core repulsion = 9582.144800 eV Total energy + Delta-G solvation = -2188.430529 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.47615 -37.55512 -33.52651 -31.43657 -31.05192 -28.60292 -24.83836 -23.77267 -22.56021 -20.49754 -18.25568 -16.64509 -16.30762 -16.20269 -14.89935 -14.65013 -14.59939 -14.00803 -12.99237 -12.93302 -12.58797 -12.01836 -11.61859 -10.97006 -10.84818 -10.80431 -10.21216 -10.00875 -9.76169 -9.66980 -9.04359 -8.60681 -8.60056 -7.99182 -6.24682 -4.30627 0.71202 1.11406 1.61810 2.18034 2.83659 3.24027 3.28154 3.31894 3.96047 4.26514 4.34151 4.51045 4.83789 5.12250 5.13655 5.37960 5.73345 5.77506 5.96341 6.42139 6.62809 7.07624 7.19781 7.68013 7.95088 7.97889 8.14431 8.70244 9.34092 10.85496 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.051792 B = 0.007155 C = 0.006970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.499388 B = 3912.175757 C = 4016.114231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.078 3.922 10 C 0.178 3.822 11 N -0.499 5.499 12 C 0.140 3.860 13 C -0.130 4.130 14 C 0.087 3.913 15 N -0.491 5.491 16 C 0.173 3.827 17 C -0.273 4.273 18 S 0.109 5.891 19 H 0.267 0.733 20 H 0.050 0.950 21 H 0.061 0.939 22 H 0.141 0.859 23 H 0.159 0.841 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -9.702 -1.140 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.038 3.962 10 C -0.105 4.105 11 N -0.213 5.213 12 C 0.010 3.990 13 C -0.153 4.153 14 C -0.064 4.064 15 N -0.201 5.201 16 C 0.004 3.996 17 C -0.395 4.395 18 S 0.365 5.635 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.078 0.922 22 H 0.159 0.841 23 H 0.176 0.824 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.195 -9.883 -1.844 11.809 hybrid contribution 0.249 1.187 1.042 1.599 sum 6.443 -8.697 -0.802 10.853 Atomic orbital electron populations 1.69917 1.06043 1.27605 1.49021 1.24954 0.94990 0.99412 0.94446 0.86451 0.79492 0.82017 0.78954 1.19894 1.20918 1.19968 1.20794 0.93073 0.88853 1.53215 0.92184 1.18373 0.91018 0.86444 1.00402 1.28321 0.96615 0.97037 0.88549 1.66358 1.13470 1.10072 1.31351 1.19562 0.94547 0.93419 0.91498 1.21312 0.97930 0.96108 0.99905 1.22066 0.95964 0.95678 0.92667 1.67805 1.23711 1.27064 1.01519 1.22021 0.89791 0.88628 0.99169 1.25067 1.09022 1.06580 0.98833 1.83964 1.40146 1.26798 1.12555 0.92281 0.93153 0.92155 0.84133 0.82360 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 13.29 55.43 0.74 -24.15 14 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 14 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 14 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 14 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 14 7 C -0.52 -13.98 9.09 -34.44 -0.31 -14.30 14 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 14 9 C 0.08 1.93 5.53 -29.03 -0.16 1.77 14 10 C 0.18 3.89 6.48 -13.81 -0.09 3.80 14 11 N -0.50 -10.96 10.56 -8.96 -0.09 -11.05 14 12 C 0.14 2.68 7.07 -84.97 -0.60 2.08 14 13 C -0.13 -2.02 10.13 -39.19 -0.40 -2.41 14 14 C 0.09 1.19 11.06 -18.11 -0.20 0.99 14 15 N -0.49 -7.34 10.36 -13.50 -0.14 -7.48 14 16 C 0.17 2.58 11.23 -17.34 -0.19 2.39 14 17 C -0.27 -4.78 6.59 -38.54 -0.25 -5.03 14 18 S 0.11 1.97 23.10 -107.50 -2.48 -0.52 14 19 H 0.27 7.08 8.31 -40.82 -0.34 6.74 14 20 H 0.05 1.24 8.14 -51.93 -0.42 0.81 14 21 H 0.06 1.59 8.14 -51.93 -0.42 1.16 14 22 H 0.14 1.89 8.06 -52.49 -0.42 1.46 14 23 H 0.16 1.56 8.06 -52.48 -0.42 1.13 14 24 H 0.16 1.85 8.06 -52.48 -0.42 1.43 14 LS Contribution 237.32 15.07 3.58 3.58 Total: -1.00 -29.24 237.32 -7.39 -36.63 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -1.65 Total: -3.74 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.31 Total: -9.05 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.50 Total: -42.68 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.48 Total: -0.52 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.24 -7.39 -36.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259801992.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.949 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds