Wall clock time and date at job start Mon Mar 30 2020 02:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31619 * 118.63763 * 269.73055 * 10 9 7 12 12 C 1.32970 * 120.70340 * 179.72362 * 11 10 9 13 13 O 1.34330 * 134.35505 * 180.15612 * 12 11 10 14 14 C 1.34585 * 110.97806 * 180.34518 * 13 12 11 15 15 C 1.34054 * 110.09896 * 0.02562 * 14 13 12 16 16 C 1.40615 * 118.43640 * 0.53359 * 12 11 10 17 17 C 1.39913 * 118.86728 * 359.73752 * 16 12 11 18 18 O 1.35452 * 120.83988 * 179.97438 * 17 16 12 19 19 N 1.32045 * 118.64524 * 90.00038 * 10 9 7 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 124.95075 * 180.02562 * 14 13 12 24 24 H 1.08002 * 126.96345 * 180.02562 * 15 14 13 25 25 H 0.96703 * 113.99943 * 270.02173 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6361 -4.1225 -1.1676 12 6 3.5036 -5.1289 -1.2200 13 8 4.0907 -5.8118 -2.2167 14 6 4.9052 -6.7671 -1.7318 15 6 4.8865 -6.7517 -0.3915 16 6 3.9673 -5.6768 -0.0109 17 6 3.5041 -5.1403 1.1954 18 8 3.9240 -5.6377 2.3833 19 7 2.6414 -4.1310 1.1463 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 5.4888 -7.4471 -2.3346 24 1 5.4382 -7.4000 0.2732 25 1 3.3744 -6.3561 2.7253 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259807624.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:58 Heat of formation + Delta-G solvation = -10.605429 kcal Electronic energy + Delta-G solvation = -14061.606646 eV Core-core repulsion = 11427.564462 eV Total energy + Delta-G solvation = -2634.042184 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.89009 -41.18997 -38.74400 -35.42808 -34.11116 -33.86121 -32.06535 -29.35555 -26.10404 -25.52760 -23.30986 -22.47854 -20.06706 -19.76049 -18.73275 -18.47990 -17.73713 -16.83756 -16.56068 -15.68350 -15.28860 -14.97261 -14.58327 -13.98364 -13.83271 -13.59885 -13.07035 -12.83657 -12.62738 -12.21990 -11.95558 -11.62282 -11.54274 -10.95787 -10.64171 -10.46903 -9.49580 -8.26119 -6.38209 -0.51121 -0.08457 1.09760 1.26993 1.40043 1.41969 1.53090 2.22883 2.35323 2.57991 3.01969 3.07670 3.33060 3.48000 3.92103 4.17609 4.35723 4.70293 4.92412 5.20681 5.26193 5.30857 5.62681 5.75977 5.84138 6.00559 6.46023 6.65532 7.04692 7.28098 8.85193 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.039724 B = 0.007575 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.701277 B = 3695.481217 C = 3960.215631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.043 0.957 9 C 0.092 3.908 10 C 0.392 3.608 11 N -0.540 5.540 12 C 0.278 3.722 13 O -0.193 6.193 14 C 0.020 3.980 15 C -0.174 4.174 16 C -0.276 4.276 17 C 0.409 3.591 18 O -0.467 6.467 19 N -0.562 5.562 20 H 0.271 0.729 21 H 0.038 0.962 22 H 0.033 0.967 23 H 0.278 0.722 24 H 0.205 0.795 25 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 -15.925 -0.196 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.061 0.939 9 C 0.053 3.947 10 C 0.127 3.873 11 N -0.266 5.266 12 C 0.095 3.905 13 O -0.089 6.089 14 C -0.043 4.043 15 C -0.194 4.194 16 C -0.283 4.283 17 C 0.216 3.784 18 O -0.278 6.278 19 N -0.289 5.289 20 H 0.080 0.920 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.293 0.707 24 H 0.222 0.778 25 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 9.707 -14.734 -0.566 17.653 hybrid contribution 0.318 -0.025 0.253 0.408 sum 10.025 -14.759 -0.313 17.845 Atomic orbital electron populations 1.70037 1.07354 1.28437 1.50075 1.25803 0.95905 1.02766 0.93978 0.85363 0.78373 0.78113 0.78666 1.19489 1.19553 1.19670 1.20975 0.92472 0.90711 1.52831 0.93883 1.17981 0.91255 0.87238 0.98183 1.23471 0.91901 0.92099 0.79788 1.67190 1.15486 1.12035 1.31875 1.20024 0.93090 0.91565 0.85844 1.83951 1.50307 1.41077 1.33587 1.25368 0.93191 0.90607 0.95155 1.22708 1.01413 0.99288 0.96010 1.21774 1.07550 1.04794 0.94179 1.19074 0.86557 0.87424 0.85305 1.84631 1.53709 1.56561 1.32905 1.68083 1.15893 1.13769 1.31199 0.92020 0.94407 0.94907 0.70660 0.77830 0.70630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.43 13.29 21.45 0.28 -55.14 15 2 C 0.02 0.88 5.46 84.66 0.46 1.34 15 3 Si 0.97 45.49 29.54 68.60 2.03 47.52 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 7 C -0.53 -31.98 9.09 25.60 0.23 -31.75 15 8 H 0.04 2.63 7.74 -2.91 -0.02 2.60 15 9 C 0.09 5.25 5.38 29.10 0.16 5.40 15 10 C 0.39 19.88 6.82 138.73 0.95 20.82 15 11 N -0.54 -26.09 10.35 -300.94 -3.11 -29.20 15 12 C 0.28 10.93 8.64 85.10 0.74 11.67 15 13 O -0.19 -5.92 10.56 -5.52 -0.06 -5.98 15 14 C 0.02 0.35 11.97 66.87 0.80 1.15 15 15 C -0.17 -3.48 11.14 23.46 0.26 -3.22 15 16 C -0.28 -9.10 6.42 -20.15 -0.13 -9.23 15 17 C 0.41 14.88 7.89 84.94 0.67 15.55 15 18 O -0.47 -12.64 13.58 -87.50 -1.19 -13.83 15 19 N -0.56 -25.88 10.35 -300.23 -3.11 -28.98 15 20 H 0.27 15.13 8.31 -92.70 -0.77 14.36 15 21 H 0.04 2.22 8.14 -2.38 -0.02 2.20 15 22 H 0.03 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.28 1.10 8.06 -2.91 -0.02 1.08 15 24 H 0.20 2.31 8.06 -2.91 -0.02 2.29 15 25 H 0.43 6.26 9.06 -74.06 -0.67 5.59 15 Total: -1.00 -78.04 239.29 -0.45 -78.49 By element: Atomic # 1 Polarization: -5.18 SS G_CDS: 0.57 Total: -4.61 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 4.13 Total: 11.74 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -5.93 Total: -113.33 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -1.25 Total: -19.81 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -78.04 -0.45 -78.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807624.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.882 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds