Wall clock time and date at job start Mon Mar 30 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36552 * 125.67291 * 2 1 4 4 C 1.35085 * 108.28176 * 179.97438 * 3 2 1 5 5 C 1.40251 * 107.26139 * 359.97438 * 4 3 2 6 6 C 1.35258 * 107.61468 * 0.08030 * 5 4 3 7 7 C 1.50902 * 124.00333 * 179.88056 * 6 5 4 8 8 C 1.53349 * 108.44004 * 343.37489 * 7 6 5 9 9 H 1.09004 * 109.46021 * 289.99925 * 8 7 6 10 10 C 1.52994 * 109.46711 * 170.02451 * 8 7 6 11 11 C 1.50697 * 109.47345 * 174.99871 * 10 8 7 12 12 H 1.08002 * 119.99782 * 0.02562 * 11 10 8 13 13 C 1.37879 * 119.99824 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99864 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00196 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47413 * 89.99582 * 15 13 11 17 17 H 1.48502 * 109.47059 * 210.00030 * 15 13 11 18 18 H 1.48502 * 109.47132 * 329.99409 * 15 13 11 19 19 C 1.53178 * 109.48481 * 49.96696 * 8 7 6 20 20 C 1.50748 * 128.03497 * 180.17364 * 5 4 3 21 21 H 1.08998 * 109.46710 * 269.96563 * 1 2 3 22 22 H 1.08991 * 109.47305 * 29.96805 * 1 2 3 23 23 H 1.08999 * 109.47093 * 149.97721 * 1 2 3 24 24 H 1.07998 * 125.86085 * 359.93354 * 3 2 1 25 25 H 1.07998 * 126.37217 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.67671 * 103.12187 * 7 6 5 27 27 H 1.08995 * 109.67832 * 223.62638 * 7 6 5 28 28 H 1.08999 * 109.47056 * 294.99957 * 10 8 7 29 29 H 1.09007 * 109.47167 * 54.99666 * 10 8 7 30 30 H 0.96998 * 119.99922 * 180.02562 * 14 13 11 31 31 H 1.08993 * 109.46611 * 169.89838 * 19 8 7 32 32 H 1.09001 * 109.46138 * 49.90073 * 19 8 7 33 33 H 1.08996 * 109.68300 * 283.18473 * 20 5 4 34 34 H 1.09003 * 109.68349 * 43.70485 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2613 1.1093 0.0000 4 6 3.5504 0.7055 0.0006 5 6 3.5472 -0.6970 0.0015 6 6 2.2571 -1.1034 -0.0003 7 6 1.8281 -2.5501 -0.0026 8 6 3.0270 -3.4109 -0.4187 9 1 3.2439 -3.2456 -1.4741 10 6 2.6978 -4.8876 -0.1914 11 6 3.8256 -5.7399 -0.7134 12 1 4.6910 -5.2748 -1.1621 13 6 3.7533 -7.1135 -0.6173 14 7 4.7378 -7.8573 -1.0724 15 14 2.2570 -7.9179 0.1594 16 1 1.2393 -8.1860 -0.8882 17 1 2.6584 -9.1968 0.7986 18 1 1.6838 -7.0103 1.1856 19 6 4.2492 -3.0242 0.4197 20 6 4.7325 -1.6285 0.0060 21 1 -0.3633 -0.0006 1.0277 22 1 -0.3633 0.8902 -0.5133 23 1 -0.3633 -0.8898 -0.5142 24 1 1.9192 2.1337 -0.0010 25 1 4.4215 1.3439 0.0003 26 1 1.4993 -2.8370 0.9963 27 1 1.0122 -2.6898 -0.7117 28 1 2.5676 -5.0708 0.8752 29 1 1.7776 -5.1401 -0.7183 30 1 4.6867 -8.8236 -1.0051 31 1 5.0468 -3.7485 0.2548 32 1 3.9778 -3.0166 1.4754 33 1 5.1690 -1.6720 -0.9917 34 1 5.4773 -1.2715 0.7174 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259809236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:23 Heat of formation + Delta-G solvation = 26.270582 kcal Electronic energy + Delta-G solvation = -14714.166733 eV Core-core repulsion = 12418.815713 eV Total energy + Delta-G solvation = -2295.351020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.16832 -36.63196 -33.30770 -32.37097 -30.04830 -29.55953 -26.45771 -26.07109 -22.76447 -22.01207 -20.17902 -19.30699 -17.80571 -16.66935 -16.42215 -15.27457 -14.34981 -13.80083 -13.69067 -13.44597 -13.22958 -12.84559 -12.42174 -12.38087 -12.22604 -11.85483 -11.71548 -11.50042 -11.04188 -10.65617 -10.50354 -10.04772 -9.70426 -9.59869 -9.36203 -9.00775 -8.48491 -8.18313 -7.48472 -5.99148 -3.95846 2.51064 3.15333 3.31656 3.32968 3.40646 3.44147 4.49219 4.79287 5.09442 5.11649 5.32411 5.33871 5.35392 5.53039 5.62598 5.75317 5.94721 6.03350 6.12362 6.18723 6.26804 6.46999 6.57070 6.60885 6.82397 6.96997 7.01643 7.17217 7.32815 7.40929 7.52852 7.59017 7.67367 7.85885 8.60622 9.07017 9.63798 11.14269 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.044763 B = 0.007208 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.365347 B = 3883.825536 C = 4388.754036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.449 5.449 3 C -0.036 4.036 4 C -0.192 4.192 5 C -0.163 4.163 6 C 0.023 3.977 7 C -0.046 4.046 8 C -0.063 4.063 9 H 0.065 0.935 10 C -0.010 4.010 11 C -0.513 4.513 12 H 0.075 0.925 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.877 3.123 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.106 4.106 20 C -0.048 4.048 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.130 0.870 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.016 0.984 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 15.540 3.039 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.125 5.125 3 C -0.165 4.165 4 C -0.217 4.217 5 C -0.169 4.169 6 C -0.089 4.089 7 C -0.084 4.084 8 C -0.082 4.082 9 H 0.084 0.916 10 C -0.047 4.047 11 C -0.551 4.551 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.705 3.295 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.144 4.144 20 C -0.085 4.085 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.172 0.828 25 H 0.148 0.852 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.876 15.363 3.024 17.527 hybrid contribution -0.897 -0.366 0.358 1.032 sum -8.772 14.997 3.382 17.700 Atomic orbital electron populations 1.21926 0.78108 1.03936 1.02796 1.43694 1.05639 1.05923 1.57267 1.21687 0.90476 0.90848 1.13478 1.20599 0.95607 0.94693 1.10780 1.19428 0.93754 0.93530 1.10190 1.20512 0.90151 0.89013 1.09183 1.20393 0.99513 0.87363 1.01157 1.21010 0.92355 0.95338 0.99470 0.91620 1.19630 0.97059 0.91433 0.96588 1.21146 1.04307 0.90741 1.38864 0.90678 1.25025 0.95932 0.97467 0.95144 1.69915 1.32069 1.05151 1.47287 0.86820 0.83707 0.78856 0.80126 1.20462 1.21505 1.19066 1.21608 0.98951 0.95092 0.98733 1.20098 0.93946 0.93747 1.00752 0.91362 0.90341 0.89970 0.82779 0.85194 0.91361 0.92000 0.96558 0.97188 0.92858 0.89966 0.93105 0.91798 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.97 59.85 0.66 1.38 16 2 N -0.45 -6.35 3.14 -119.73 -0.38 -6.72 16 3 C -0.04 -0.49 11.45 -16.57 -0.19 -0.68 16 4 C -0.19 -2.90 10.84 -39.95 -0.43 -3.33 16 5 C -0.16 -2.81 5.94 -104.90 -0.62 -3.43 16 6 C 0.02 0.38 6.70 -81.79 -0.55 -0.16 16 7 C -0.05 -0.80 5.19 -27.60 -0.14 -0.94 16 8 C -0.06 -1.27 2.11 -90.35 -0.19 -1.46 16 9 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 10 C -0.01 -0.23 3.51 -27.89 -0.10 -0.33 16 11 C -0.51 -14.44 8.82 -34.44 -0.30 -14.75 16 12 H 0.08 2.27 7.37 -52.49 -0.39 1.88 16 13 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 15 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 19 C -0.11 -2.07 5.14 -26.44 -0.14 -2.20 16 20 C -0.05 -0.82 6.29 -27.66 -0.17 -1.00 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.77 7.54 -51.93 -0.39 0.38 16 24 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 25 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 27 H 0.06 0.99 7.73 -51.93 -0.40 0.59 16 28 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 29 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.08 1.76 6.73 -51.93 -0.35 1.41 16 32 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 273.22 15.07 4.12 4.12 Total: -1.00 -31.65 273.22 -7.70 -39.35 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.26 Total: -1.57 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -2.28 Total: -25.11 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.40 Total: -33.89 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.65 -7.70 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.622 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds