Wall clock time and date at job start Mon Mar 30 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36552 * 125.67291 * 2 1 4 4 C 1.35085 * 108.28176 * 179.97438 * 3 2 1 5 5 C 1.40251 * 107.26139 * 359.97438 * 4 3 2 6 6 C 1.35258 * 107.61468 * 0.08030 * 5 4 3 7 7 C 1.50902 * 124.00333 * 179.88056 * 6 5 4 8 8 C 1.53349 * 108.44004 * 343.37489 * 7 6 5 9 9 H 1.09004 * 109.46021 * 289.99925 * 8 7 6 10 10 C 1.52994 * 109.46711 * 170.02451 * 8 7 6 11 11 C 1.50697 * 109.47345 * 174.99871 * 10 8 7 12 12 H 1.08002 * 119.99782 * 0.02562 * 11 10 8 13 13 C 1.37879 * 119.99824 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99864 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00196 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47413 * 89.99582 * 15 13 11 17 17 H 1.48502 * 109.47059 * 210.00030 * 15 13 11 18 18 H 1.48502 * 109.47132 * 329.99409 * 15 13 11 19 19 C 1.53178 * 109.48481 * 49.96696 * 8 7 6 20 20 C 1.50748 * 128.03497 * 180.17364 * 5 4 3 21 21 H 1.08998 * 109.46710 * 269.96563 * 1 2 3 22 22 H 1.08991 * 109.47305 * 29.96805 * 1 2 3 23 23 H 1.08999 * 109.47093 * 149.97721 * 1 2 3 24 24 H 1.07998 * 125.86085 * 359.93354 * 3 2 1 25 25 H 1.07998 * 126.37217 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.67671 * 103.12187 * 7 6 5 27 27 H 1.08995 * 109.67832 * 223.62638 * 7 6 5 28 28 H 1.08999 * 109.47056 * 294.99957 * 10 8 7 29 29 H 1.09007 * 109.47167 * 54.99666 * 10 8 7 30 30 H 0.96998 * 119.99922 * 180.02562 * 14 13 11 31 31 H 1.08993 * 109.46611 * 169.89838 * 19 8 7 32 32 H 1.09001 * 109.46138 * 49.90073 * 19 8 7 33 33 H 1.08996 * 109.68300 * 283.18473 * 20 5 4 34 34 H 1.09003 * 109.68349 * 43.70485 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2613 1.1093 0.0000 4 6 3.5504 0.7055 0.0006 5 6 3.5472 -0.6970 0.0015 6 6 2.2571 -1.1034 -0.0003 7 6 1.8281 -2.5501 -0.0026 8 6 3.0270 -3.4109 -0.4187 9 1 3.2439 -3.2456 -1.4741 10 6 2.6978 -4.8876 -0.1914 11 6 3.8256 -5.7399 -0.7134 12 1 4.6910 -5.2748 -1.1621 13 6 3.7533 -7.1135 -0.6173 14 7 4.7378 -7.8573 -1.0724 15 14 2.2570 -7.9179 0.1594 16 1 1.2393 -8.1860 -0.8882 17 1 2.6584 -9.1968 0.7986 18 1 1.6838 -7.0103 1.1856 19 6 4.2492 -3.0242 0.4197 20 6 4.7325 -1.6285 0.0060 21 1 -0.3633 -0.0006 1.0277 22 1 -0.3633 0.8902 -0.5133 23 1 -0.3633 -0.8898 -0.5142 24 1 1.9192 2.1337 -0.0010 25 1 4.4215 1.3439 0.0003 26 1 1.4993 -2.8370 0.9963 27 1 1.0122 -2.6898 -0.7117 28 1 2.5676 -5.0708 0.8752 29 1 1.7776 -5.1401 -0.7183 30 1 4.6867 -8.8236 -1.0051 31 1 5.0468 -3.7485 0.2548 32 1 3.9778 -3.0166 1.4754 33 1 5.1690 -1.6720 -0.9917 34 1 5.4773 -1.2715 0.7174 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259809236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:23 Heat of formation + Delta-G solvation = 8.545056 kcal Electronic energy + Delta-G solvation = -14714.935370 eV Core-core repulsion = 12418.815713 eV Total energy + Delta-G solvation = -2296.119657 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.30195 -38.16837 -34.95180 -34.00511 -31.62399 -30.93665 -28.10251 -27.05420 -24.48204 -23.52238 -21.49810 -20.72800 -19.28429 -18.64224 -17.54663 -16.45102 -16.14706 -15.23626 -15.16331 -14.97394 -14.56814 -14.24989 -13.91068 -13.71022 -13.50816 -13.23967 -13.11107 -12.91917 -12.50789 -12.31014 -12.12884 -11.76394 -11.67880 -11.31790 -11.08773 -10.96270 -10.69521 -9.26954 -8.67122 -8.23844 -6.26214 1.37180 1.39449 1.39924 1.51196 2.12961 2.17891 2.39704 3.11198 3.88754 4.03110 4.06532 4.13146 4.27296 4.45292 4.48156 4.61329 4.69394 4.71637 4.78878 4.83973 4.85212 4.98447 5.04620 5.19660 5.24914 5.36867 5.48839 5.56106 5.69999 5.72288 5.75165 6.21902 6.35661 6.42806 6.65431 6.81034 7.36944 8.92982 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.044763 B = 0.007208 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.365347 B = 3883.825536 C = 4388.754036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.448 5.448 3 C -0.019 4.019 4 C -0.216 4.216 5 C -0.190 4.190 6 C 0.000 4.000 7 C -0.035 4.035 8 C -0.059 4.059 9 H 0.046 0.954 10 C -0.005 4.005 11 C -0.519 4.519 12 H 0.034 0.966 13 C 0.001 3.999 14 N -0.954 5.954 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.287 1.287 18 H -0.245 1.245 19 C -0.101 4.101 20 C -0.042 4.042 21 H 0.083 0.917 22 H 0.106 0.894 23 H 0.083 0.917 24 H 0.195 0.805 25 H 0.143 0.857 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 17.389 4.039 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.124 5.124 3 C -0.148 4.148 4 C -0.240 4.240 5 C -0.196 4.196 6 C -0.113 4.113 7 C -0.073 4.073 8 C -0.078 4.078 9 H 0.064 0.936 10 C -0.042 4.042 11 C -0.557 4.557 12 H 0.052 0.948 13 C -0.195 4.195 14 N -0.596 5.596 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.169 1.169 19 C -0.139 4.139 20 C -0.079 4.079 21 H 0.101 0.899 22 H 0.125 0.875 23 H 0.102 0.898 24 H 0.211 0.789 25 H 0.161 0.839 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.716 17.235 4.024 20.690 hybrid contribution 0.055 -0.868 -0.002 0.869 sum -10.661 16.367 4.022 19.943 Atomic orbital electron populations 1.22259 0.75448 1.05520 1.04275 1.43959 1.07305 1.05092 1.56003 1.22302 0.89824 0.92230 1.10481 1.20854 0.97286 0.93846 1.12051 1.19570 0.93730 0.94712 1.11580 1.20359 0.90632 0.89441 1.10835 1.20163 0.97945 0.87434 1.01747 1.20864 0.94340 0.94075 0.98533 0.93582 1.19566 0.95464 0.92847 0.96368 1.21449 1.04467 0.91543 1.38255 0.94764 1.26007 0.99442 0.98198 0.95864 1.70078 1.34671 1.05587 1.49217 0.85687 0.79506 0.77874 0.79753 1.19234 1.21259 1.16872 1.21495 0.97747 0.95780 0.98864 1.19978 0.94847 0.92631 1.00484 0.89884 0.87519 0.89787 0.78850 0.83884 0.90675 0.90611 0.96117 0.96254 0.92706 0.93283 0.92689 0.92725 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.97 127.77 1.40 2.41 16 2 N -0.45 -11.16 3.14 -532.70 -1.67 -12.83 16 3 C -0.02 -0.44 11.45 83.23 0.95 0.51 16 4 C -0.22 -6.07 10.84 22.03 0.24 -5.83 16 5 C -0.19 -6.35 5.94 -20.05 -0.12 -6.47 16 6 C 0.00 -0.01 6.70 41.32 0.28 0.27 16 7 C -0.04 -1.15 5.19 30.03 0.16 -0.99 16 8 C -0.06 -2.42 2.11 -10.62 -0.02 -2.44 16 9 H 0.05 2.03 8.11 -2.39 -0.02 2.01 16 10 C -0.01 -0.24 3.51 29.85 0.10 -0.14 16 11 C -0.52 -30.24 8.82 25.60 0.23 -30.02 16 12 H 0.03 2.20 7.37 -2.91 -0.02 2.18 16 13 C 0.00 0.05 5.47 84.66 0.46 0.51 16 14 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 15 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 19 C -0.10 -4.06 5.14 30.78 0.16 -3.90 16 20 C -0.04 -1.46 6.29 29.99 0.19 -1.28 16 21 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.28 7.54 -2.39 -0.02 1.26 16 24 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 25 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 26 H 0.07 2.35 8.12 -2.39 -0.02 2.33 16 27 H 0.08 2.24 7.73 -2.39 -0.02 2.22 16 28 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 29 H 0.02 0.87 7.57 -2.38 -0.02 0.86 16 30 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.05 2.24 6.73 -2.39 -0.02 2.22 16 32 H 0.05 2.11 8.11 -2.39 -0.02 2.09 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -70.01 273.22 5.54 -64.48 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.00 Total: 9.71 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 4.02 Total: -47.36 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.37 Total: -73.36 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -70.01 5.54 -64.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.022 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds