Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99937 * 2 1 4 4 H 1.48500 * 109.47593 * 270.00571 * 3 2 1 5 5 H 1.48506 * 109.47445 * 30.00348 * 3 2 1 6 6 H 1.48504 * 109.47184 * 150.00020 * 3 2 1 7 7 C 1.37876 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00532 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99805 * 179.97438 * 7 2 1 10 10 C 1.50704 * 109.47224 * 180.02562 * 9 7 2 11 11 N 1.28041 * 124.76971 * 89.99997 * 10 9 7 12 12 C 1.34553 * 118.04043 * 180.02562 * 11 10 9 13 13 C 1.41257 * 129.15113 * 180.02562 * 12 11 10 14 14 C 1.37690 * 118.79900 * 179.97438 * 13 12 11 15 15 C 1.38627 * 119.67450 * 359.97438 * 14 13 12 16 16 N 1.31431 * 120.87237 * 0.02562 * 15 14 13 17 17 C 1.32962 * 121.97435 * 359.95849 * 16 15 14 18 18 S 1.75809 * 124.76325 * 270.02888 * 10 9 7 19 19 H 0.96998 * 120.00387 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47182 * 60.00232 * 9 7 2 21 21 H 1.08998 * 109.47860 * 299.99879 * 9 7 2 22 22 H 1.08005 * 120.60149 * 359.95163 * 13 12 11 23 23 H 1.08001 * 120.16034 * 180.02562 * 14 13 12 24 24 H 1.07998 * 119.56554 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0023 11 7 4.2569 -3.3025 -1.0546 12 6 4.7019 -4.5626 -0.8980 13 6 5.0400 -5.5179 -1.8821 14 6 5.4788 -6.7591 -1.4787 15 6 5.5801 -7.0449 -0.1260 16 7 5.2621 -6.1463 0.7789 17 6 4.8334 -4.9327 0.4456 18 16 4.3480 -3.5611 1.4413 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8746 -0.6800 -0.8911 22 1 4.9554 -5.2792 -2.9320 23 1 5.7435 -7.5060 -2.2125 24 1 5.9248 -8.0189 0.1885 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823479.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = 36.514566 kcal Electronic energy + Delta-G solvation = -11776.972011 eV Core-core repulsion = 9587.725975 eV Total energy + Delta-G solvation = -2189.246037 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.70724 -38.74269 -35.34386 -33.44613 -32.74028 -30.14059 -26.36343 -25.20755 -23.86384 -21.78658 -19.49660 -19.11074 -18.04838 -17.58808 -16.48270 -16.18582 -15.96223 -15.07616 -14.49870 -14.24972 -13.97522 -13.77592 -13.50473 -13.04379 -12.73384 -12.46851 -11.92026 -11.72726 -11.47643 -11.07679 -10.82437 -10.26973 -9.77352 -9.57008 -8.34142 -6.43856 -0.71234 -0.03679 0.00671 0.64658 1.32951 1.40888 1.42489 1.53346 2.33892 2.64576 2.86336 3.02324 3.44304 3.61688 3.91781 4.03936 4.38677 4.60878 4.80863 4.89955 4.98307 5.02446 5.37630 5.51612 6.11782 6.53583 6.58731 6.64304 7.18947 8.82060 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.057246 B = 0.007311 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.002798 B = 3828.894274 C = 3956.492490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.235 1.235 7 C -0.529 4.529 8 H 0.026 0.974 9 C 0.055 3.945 10 C 0.167 3.833 11 N -0.498 5.498 12 C 0.009 3.991 13 C -0.037 4.037 14 C -0.140 4.140 15 C 0.126 3.874 16 N -0.474 5.474 17 C -0.008 4.008 18 S 0.077 5.923 19 H 0.272 0.728 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.163 0.837 23 H 0.200 0.800 24 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.610 -10.740 -1.909 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.158 1.158 7 C -0.568 4.568 8 H 0.044 0.956 9 C 0.014 3.986 10 C -0.118 4.118 11 N -0.211 5.211 12 C -0.115 4.115 13 C -0.066 4.066 14 C -0.163 4.163 15 C -0.043 4.043 16 N -0.185 5.185 17 C -0.254 4.254 18 S 0.331 5.669 19 H 0.081 0.919 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.181 0.819 23 H 0.217 0.783 24 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 13.344 -10.299 -0.406 16.861 hybrid contribution -0.364 0.429 -1.397 1.506 sum 12.981 -9.870 -1.803 16.406 Atomic orbital electron populations 1.70027 1.08406 1.28755 1.50823 1.25917 0.95678 1.03400 0.93189 0.85657 0.79881 0.77561 0.79688 1.18834 1.20419 1.15830 1.20805 0.89368 0.93550 1.53107 0.95561 1.18555 0.95227 0.84532 1.00303 1.28051 0.94361 1.01073 0.88291 1.66206 1.16992 1.06089 1.31800 1.20681 1.04188 0.92273 0.94315 1.21619 0.94189 0.91333 0.99417 1.22502 0.98790 0.96536 0.98456 1.23774 0.92961 0.98415 0.89196 1.67054 1.11960 0.99400 1.40131 1.24591 1.07127 0.99292 0.94414 1.84890 1.65919 1.04891 1.11152 0.91904 0.91568 0.92001 0.81899 0.78285 0.76942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.90 13.96 21.45 0.30 -57.60 14 2 C 0.02 0.96 5.47 84.65 0.46 1.42 14 3 Si 0.95 41.74 27.47 68.60 1.88 43.63 14 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 14 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 14 6 H -0.24 -9.23 6.54 99.48 0.65 -8.58 14 7 C -0.53 -30.42 9.65 25.60 0.25 -30.17 14 8 H 0.03 1.71 7.98 -2.91 -0.02 1.69 14 9 C 0.05 2.59 4.64 29.10 0.14 2.72 14 10 C 0.17 7.52 6.73 88.66 0.60 8.12 14 11 N -0.50 -22.03 10.55 -178.40 -1.88 -23.92 14 12 C 0.01 0.32 6.97 39.89 0.28 0.60 14 13 C -0.04 -0.99 10.22 22.88 0.23 -0.76 14 14 C -0.14 -2.49 10.06 22.23 0.22 -2.26 14 15 C 0.13 2.60 11.19 84.85 0.95 3.55 14 16 N -0.47 -15.05 10.37 -191.07 -1.98 -17.03 14 17 C -0.01 -0.30 7.70 84.94 0.65 0.36 14 18 S 0.08 3.07 23.37 -56.49 -1.32 1.75 14 19 H 0.27 15.44 8.31 -92.71 -0.77 14.67 14 20 H 0.07 2.86 7.20 -2.39 -0.02 2.84 14 21 H 0.06 2.80 7.57 -2.39 -0.02 2.79 14 22 H 0.16 3.57 8.06 -2.91 -0.02 3.55 14 23 H 0.20 1.36 8.06 -2.91 -0.02 1.34 14 24 H 0.21 2.18 8.06 -2.91 -0.02 2.16 14 Total: -1.00 -72.82 234.34 1.94 -70.88 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: 1.17 Total: -1.29 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 3.78 Total: -16.42 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -3.57 Total: -98.55 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.63 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.32 Total: 1.75 kcal Total: -72.82 1.94 -70.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823479.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.392 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds