Wall clock time and date at job start Mon Mar 30 2020 02:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47255 * 270.00092 * 3 2 1 5 5 H 1.48500 * 109.47282 * 29.99873 * 3 2 1 6 6 H 1.48502 * 109.47248 * 149.99611 * 3 2 1 7 7 C 1.37880 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46834 * 179.97438 * 9 7 2 11 11 N 1.32140 * 118.75790 * 270.02427 * 10 9 7 12 12 C 1.32098 * 120.91545 * 180.02562 * 11 10 9 13 13 C 1.39456 * 119.01944 * 0.02562 * 12 11 10 14 14 S 1.75743 * 131.68677 * 180.02562 * 13 12 11 15 15 C 1.75555 * 91.50730 * 179.97438 * 14 13 12 16 16 C 1.32323 * 110.85050 * 359.76336 * 15 14 13 17 17 C 1.40164 * 118.89720 * 359.97226 * 13 12 11 18 18 N 1.30955 * 118.74690 * 90.00615 * 10 9 7 19 19 H 0.97008 * 120.00416 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.46759 * 60.00217 * 9 7 2 21 21 H 1.09001 * 109.47579 * 300.00197 * 9 7 2 22 22 H 1.08002 * 120.48490 * 180.02562 * 12 11 10 23 23 H 1.08000 * 124.57429 * 179.97438 * 15 14 13 24 24 H 1.08004 * 122.09828 * 180.27693 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2303 -3.6445 0.0015 11 7 2.6430 -4.1279 -1.1571 12 6 3.5004 -5.1315 -1.2070 13 6 3.9693 -5.6808 -0.0140 14 16 5.0921 -6.9942 0.3063 15 6 4.9138 -6.7856 2.0403 16 6 4.0762 -5.7980 2.3122 17 6 3.5155 -5.1490 1.2009 18 7 2.6404 -4.1228 1.1495 19 1 -0.4851 0.8401 -0.0004 20 1 0.6240 -2.5574 -0.8881 21 1 0.6246 -2.5563 0.8919 22 1 3.8333 -5.5209 -2.1578 23 1 5.4220 -7.3807 2.7846 24 1 3.8375 -5.5105 3.3255 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259829002.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:54 Heat of formation + Delta-G solvation = 63.458091 kcal Electronic energy + Delta-G solvation = -11862.649264 eV Core-core repulsion = 9674.571586 eV Total energy + Delta-G solvation = -2188.077678 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.59796 -36.30800 -33.50771 -32.53047 -30.73143 -28.10450 -24.62497 -24.15765 -22.45064 -20.25762 -18.08714 -17.09234 -16.45843 -15.66373 -14.59460 -14.54211 -14.38937 -13.98058 -12.80519 -12.53368 -12.40358 -11.73292 -11.40327 -11.25672 -10.88059 -10.67972 -10.48743 -10.37900 -9.73805 -9.48211 -8.87997 -8.74145 -8.44670 -7.82408 -6.07496 -4.10262 0.62936 1.33736 1.48176 1.89402 2.43618 3.31725 3.36989 3.41623 4.24180 4.32781 4.48396 4.64529 4.74488 5.07692 5.23155 5.30350 5.74082 5.85511 6.00563 6.14775 6.90626 7.41196 7.44411 7.51037 7.86032 8.19268 8.78495 8.89083 9.51587 11.03395 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.053126 B = 0.006800 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.921158 B = 4116.777547 C = 4204.151989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.054 0.946 9 C 0.079 3.921 10 C 0.367 3.633 11 N -0.498 5.498 12 C 0.200 3.800 13 C -0.286 4.286 14 S 0.102 5.898 15 C -0.164 4.164 16 C -0.117 4.117 17 C 0.168 3.832 18 N -0.492 5.492 19 H 0.264 0.736 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.165 0.835 23 H 0.175 0.825 24 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -13.523 1.628 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.041 3.959 10 C 0.099 3.901 11 N -0.212 5.212 12 C 0.021 3.979 13 C -0.405 4.405 14 S 0.361 5.639 15 C -0.302 4.302 16 C -0.148 4.148 17 C 0.024 3.976 18 N -0.207 5.207 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.182 0.818 23 H 0.192 0.808 24 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.164 -13.575 0.850 16.401 hybrid contribution 0.362 1.100 0.894 1.463 sum 9.526 -12.475 1.744 15.793 Atomic orbital electron populations 1.69939 1.05958 1.27070 1.50033 1.24929 0.94952 0.99206 0.94947 0.86437 0.79707 0.82758 0.78207 1.20454 1.20969 1.19911 1.20771 0.92784 0.89261 1.51746 0.92792 1.18304 0.91154 0.86603 0.99864 1.24370 0.91827 0.92569 0.81285 1.68659 1.11673 1.09897 1.30985 1.22732 0.89800 0.89723 0.95679 1.24282 1.08911 1.06494 1.00841 1.83868 1.45803 1.33808 1.00458 1.25363 1.03273 1.02279 0.99312 1.19649 0.98835 0.96728 0.99618 1.19422 0.93821 0.92973 0.91355 1.68577 1.11649 1.09421 1.31005 0.92621 0.93074 0.93178 0.81750 0.80777 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 14 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 14 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 14 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 14 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 14 7 C -0.51 -14.68 9.09 -34.44 -0.31 -15.00 14 8 H 0.05 1.58 7.74 -52.48 -0.41 1.17 14 9 C 0.08 2.15 5.39 -29.04 -0.16 2.00 14 10 C 0.37 8.85 6.81 -157.61 -1.07 7.78 14 11 N -0.50 -10.93 10.32 -10.67 -0.11 -11.04 14 12 C 0.20 3.48 11.34 -16.98 -0.19 3.29 14 13 C -0.29 -4.77 6.54 -38.41 -0.25 -5.02 14 14 S 0.10 1.21 23.29 -107.50 -2.50 -1.29 14 15 C -0.16 -1.83 11.09 28.81 0.32 -1.51 14 16 C -0.12 -1.68 10.16 -40.70 -0.41 -2.10 14 17 C 0.17 3.15 7.03 -84.96 -0.60 2.56 14 18 N -0.49 -11.25 10.39 -9.04 -0.09 -11.34 14 19 H 0.26 7.35 8.31 -40.82 -0.34 7.01 14 20 H 0.05 1.43 8.14 -51.93 -0.42 1.00 14 21 H 0.05 1.41 8.14 -51.93 -0.42 0.99 14 22 H 0.17 2.14 8.06 -52.49 -0.42 1.72 14 23 H 0.17 1.25 8.06 -52.49 -0.42 0.82 14 24 H 0.15 1.94 8.06 -52.48 -0.42 1.52 14 LS Contribution 237.54 15.07 3.58 3.58 Total: -1.00 -31.95 237.54 -7.84 -39.79 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -1.65 Total: -4.60 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.78 Total: -6.33 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.53 Total: -48.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.50 Total: -1.29 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.95 -7.84 -39.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829002.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.253 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds