Wall clock time and date at job start Mon Mar 30 2020 02:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47255 * 270.00092 * 3 2 1 5 5 H 1.48500 * 109.47282 * 29.99873 * 3 2 1 6 6 H 1.48502 * 109.47248 * 149.99611 * 3 2 1 7 7 C 1.37880 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46834 * 179.97438 * 9 7 2 11 11 N 1.32140 * 118.75790 * 270.02427 * 10 9 7 12 12 C 1.32098 * 120.91545 * 180.02562 * 11 10 9 13 13 C 1.39456 * 119.01944 * 0.02562 * 12 11 10 14 14 S 1.75743 * 131.68677 * 180.02562 * 13 12 11 15 15 C 1.75555 * 91.50730 * 179.97438 * 14 13 12 16 16 C 1.32323 * 110.85050 * 359.76336 * 15 14 13 17 17 C 1.40164 * 118.89720 * 359.97226 * 13 12 11 18 18 N 1.30955 * 118.74690 * 90.00615 * 10 9 7 19 19 H 0.97008 * 120.00416 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.46759 * 60.00217 * 9 7 2 21 21 H 1.09001 * 109.47579 * 300.00197 * 9 7 2 22 22 H 1.08002 * 120.48490 * 180.02562 * 12 11 10 23 23 H 1.08000 * 124.57429 * 179.97438 * 15 14 13 24 24 H 1.08004 * 122.09828 * 180.27693 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2303 -3.6445 0.0015 11 7 2.6430 -4.1279 -1.1571 12 6 3.5004 -5.1315 -1.2070 13 6 3.9693 -5.6808 -0.0140 14 16 5.0921 -6.9942 0.3063 15 6 4.9138 -6.7856 2.0403 16 6 4.0762 -5.7980 2.3122 17 6 3.5155 -5.1490 1.2009 18 7 2.6404 -4.1228 1.1495 19 1 -0.4851 0.8401 -0.0004 20 1 0.6240 -2.5574 -0.8881 21 1 0.6246 -2.5563 0.8919 22 1 3.8333 -5.5209 -2.1578 23 1 5.4220 -7.3807 2.7846 24 1 3.8375 -5.5105 3.3255 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829002.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:54 Heat of formation + Delta-G solvation = 41.699078 kcal Electronic energy + Delta-G solvation = -11863.592805 eV Core-core repulsion = 9674.571586 eV Total energy + Delta-G solvation = -2189.021219 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.04623 -37.60382 -35.47135 -34.22228 -32.30266 -29.92050 -26.30385 -25.64695 -24.05803 -21.65857 -19.35850 -18.67698 -18.42251 -17.17721 -16.42535 -16.10057 -15.54885 -15.15633 -14.45942 -14.27324 -13.90259 -13.50095 -13.27370 -12.76928 -12.64057 -12.36034 -12.07638 -12.03956 -11.52691 -11.43338 -10.66042 -10.28354 -10.17788 -8.95705 -8.26483 -6.39450 -0.60354 -0.13628 0.37506 0.80867 1.22443 1.37634 1.40237 1.51149 2.35723 2.78683 2.96408 3.05744 3.22512 3.48163 3.79727 4.20505 4.44410 4.66955 4.85248 4.97704 5.14671 5.32170 5.40443 5.61869 5.98138 6.04849 6.65216 7.21630 7.26944 8.84575 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.053126 B = 0.006800 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.921158 B = 4116.777547 C = 4204.151989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.043 0.957 9 C 0.090 3.910 10 C 0.343 3.657 11 N -0.534 5.534 12 C 0.202 3.798 13 C -0.306 4.306 14 S 0.194 5.806 15 C -0.127 4.127 16 C -0.155 4.155 17 C 0.141 3.859 18 N -0.530 5.530 19 H 0.270 0.730 20 H 0.027 0.973 21 H 0.021 0.979 22 H 0.210 0.790 23 H 0.227 0.773 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.144 -15.390 1.848 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.061 0.939 9 C 0.051 3.949 10 C 0.074 3.926 11 N -0.249 5.249 12 C 0.024 3.976 13 C -0.425 4.425 14 S 0.454 5.546 15 C -0.265 4.265 16 C -0.186 4.186 17 C -0.002 4.002 18 N -0.245 5.245 19 H 0.079 0.921 20 H 0.045 0.955 21 H 0.040 0.960 22 H 0.226 0.774 23 H 0.243 0.757 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.146 -15.485 1.068 19.709 hybrid contribution -0.393 1.386 0.856 1.676 sum 11.753 -14.099 1.924 18.456 Atomic orbital electron populations 1.70053 1.07500 1.28384 1.50308 1.25882 0.95934 1.03011 0.94073 0.85330 0.78271 0.77921 0.78777 1.19239 1.19638 1.19654 1.20979 0.92388 0.90778 1.52455 0.93881 1.17874 0.91531 0.88244 0.97210 1.23507 0.93113 0.93190 0.82808 1.68505 1.14003 1.12303 1.30085 1.23429 0.88080 0.88116 0.97947 1.24726 1.09769 1.08157 0.99819 1.83665 1.41717 1.29278 0.99924 1.26057 1.00100 0.99894 1.00436 1.19756 1.01147 0.98628 0.99055 1.20078 0.93588 0.92502 0.94014 1.68353 1.13740 1.11733 1.30721 0.92097 0.95498 0.96033 0.77362 0.75688 0.82067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.76 13.29 21.45 0.28 -56.48 14 2 C 0.01 0.60 5.46 84.66 0.46 1.06 14 3 Si 0.97 45.84 29.54 68.60 2.03 47.86 14 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 14 5 H -0.27 -12.15 7.11 99.48 0.71 -11.44 14 6 H -0.27 -12.58 7.11 99.48 0.71 -11.88 14 7 C -0.53 -32.23 9.09 25.60 0.23 -31.99 14 8 H 0.04 2.65 7.74 -2.91 -0.02 2.63 14 9 C 0.09 5.29 5.39 29.10 0.16 5.45 14 10 C 0.34 17.63 6.81 138.90 0.95 18.57 14 11 N -0.53 -24.34 10.32 -187.66 -1.94 -26.28 14 12 C 0.20 6.86 11.34 84.95 0.96 7.83 14 13 C -0.31 -9.64 6.54 23.03 0.15 -9.49 14 14 S 0.19 3.64 23.29 -56.49 -1.32 2.33 14 15 C -0.13 -2.17 11.09 66.74 0.74 -1.43 14 16 C -0.16 -4.14 10.16 21.71 0.22 -3.92 14 17 C 0.14 5.27 7.03 39.65 0.28 5.55 14 18 N -0.53 -25.51 10.39 -182.50 -1.90 -27.41 14 19 H 0.27 15.37 8.31 -92.70 -0.77 14.60 14 20 H 0.03 1.64 8.14 -2.38 -0.02 1.62 14 21 H 0.02 1.33 8.14 -2.39 -0.02 1.31 14 22 H 0.21 4.88 8.06 -2.91 -0.02 4.85 14 23 H 0.23 1.56 8.06 -2.91 -0.02 1.54 14 24 H 0.16 3.89 8.06 -2.91 -0.02 3.87 14 Total: -1.00 -75.10 237.54 2.53 -72.57 By element: Atomic # 1 Polarization: -5.44 SS G_CDS: 1.22 Total: -4.23 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 4.15 Total: -8.37 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -3.55 Total: -110.16 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.32 Total: 2.33 kcal Total: -75.10 2.53 -72.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829002.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.268 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds