Wall clock time and date at job start Mon Mar 30 2020 02:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31433 * 1 3 3 Si 1.86809 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47100 * 240.00110 * 3 2 1 5 5 H 1.48498 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46829 * 120.00300 * 3 2 1 7 7 C 1.38853 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00104 * 160.77365 * 7 2 1 9 9 N 1.37330 * 119.99519 * 340.76419 * 7 2 1 10 10 C 1.36913 * 126.42323 * 327.97726 * 9 7 2 11 11 O 1.35291 * 125.07764 * 0.02562 * 10 9 7 12 12 N 1.30704 * 109.84622 * 180.02562 * 10 9 7 13 13 C 1.36034 * 109.71524 * 0.02562 * 12 10 9 14 14 C 1.39718 * 133.34039 * 179.97438 * 13 12 10 15 15 C 1.37801 * 119.89610 * 179.78156 * 14 13 12 16 16 C 1.38596 * 120.55007 * 0.47535 * 15 14 13 17 17 C 1.38542 * 120.34862 * 359.50773 * 16 15 14 18 18 O 1.35909 * 120.12814 * 180.23372 * 17 16 15 19 19 C 1.38697 * 126.41864 * 148.00914 * 9 7 2 20 20 H 0.97002 * 119.99806 * 359.97438 * 1 2 3 21 21 H 0.96702 * 114.00033 * 270.04950 * 11 10 9 22 22 H 1.07993 * 120.05289 * 0.02562 * 14 13 12 23 23 H 1.08001 * 119.72151 * 180.23543 * 15 14 13 24 24 H 1.08007 * 119.82641 * 179.77869 * 16 15 14 25 25 H 0.96696 * 114.00464 * 89.99676 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1020 1.6965 -1.2125 5 1 1.2834 2.7465 0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0086 -1.2025 -0.0005 8 1 3.0434 -1.2284 -0.3085 9 7 1.3794 -2.3587 0.3908 10 6 0.3873 -2.4671 1.3281 11 8 -0.1379 -1.4348 2.0272 12 7 0.0235 -3.7169 1.4466 13 6 0.7540 -4.4899 0.5985 14 6 0.7732 -5.8601 0.3258 15 6 1.6461 -6.3609 -0.6155 16 6 2.5149 -5.5175 -1.2899 17 6 2.5096 -4.1562 -1.0328 18 8 3.3602 -3.3326 -1.7001 19 6 1.6303 -3.6356 -0.0890 20 1 -0.4850 0.8401 0.0004 21 1 0.3179 -1.2515 2.8601 22 1 0.1023 -6.5252 0.8492 23 1 1.6559 -7.4200 -0.8268 24 1 3.1966 -5.9231 -2.0229 25 1 2.9988 -2.9775 -2.5237 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892847.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:00 Heat of formation + Delta-G solvation = -5.224737 kcal Electronic energy + Delta-G solvation = -14736.303216 eV Core-core repulsion = 12102.494356 eV Total energy + Delta-G solvation = -2633.808860 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86969 -37.68278 -36.08131 -35.04650 -33.67999 -31.28247 -28.35483 -27.82224 -25.22175 -21.84939 -21.31126 -20.49822 -18.60425 -17.16241 -16.66986 -16.10707 -15.11821 -14.99226 -14.57619 -14.10106 -13.80371 -13.34525 -12.60674 -12.11870 -11.72927 -11.48236 -11.32867 -11.13206 -10.79255 -10.65967 -10.37831 -9.85423 -9.63026 -8.88580 -8.79144 -7.30656 -7.08869 -6.79995 -4.49041 1.78764 2.45345 2.96828 3.00810 3.03491 3.68925 3.72462 4.18880 4.63671 4.71756 5.05773 5.08600 5.71082 5.87520 6.07790 6.34106 6.41363 6.64702 6.90992 7.07710 7.21199 7.27613 7.36328 7.71620 8.07538 8.30688 8.39300 8.62969 9.15777 9.35398 10.19895 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.012013 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.408123 B = 2330.219413 C = 2994.253240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.055 3.945 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.361 4.361 8 H 0.115 0.885 9 N -0.279 5.279 10 C 0.419 3.581 11 O -0.417 6.417 12 N -0.538 5.538 13 C 0.059 3.941 14 C -0.089 4.089 15 C -0.131 4.131 16 C -0.174 4.174 17 C 0.139 3.861 18 O -0.497 6.497 19 C -0.018 4.018 20 H 0.283 0.717 21 H 0.375 0.625 22 H 0.116 0.884 23 H 0.117 0.883 24 H 0.119 0.881 25 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -2.852 -1.124 4.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.161 4.161 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.133 0.867 9 N 0.041 4.959 10 C 0.120 3.880 11 O -0.213 6.213 12 N -0.271 5.271 13 C -0.067 4.067 14 C -0.109 4.109 15 C -0.152 4.152 16 C -0.195 4.195 17 C 0.092 3.908 18 O -0.306 6.306 19 C -0.134 4.134 20 H 0.093 0.907 21 H 0.228 0.772 22 H 0.134 0.866 23 H 0.135 0.865 24 H 0.137 0.863 25 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.613 -2.743 -0.530 3.825 hybrid contribution 0.838 1.481 -0.601 1.804 sum 3.451 -1.263 -1.131 3.845 Atomic orbital electron populations 1.69928 1.06450 1.29538 1.36553 1.25619 0.95361 1.00630 0.94475 0.85882 0.79191 0.79319 0.79754 1.19142 1.20299 1.19104 1.19851 0.97105 0.82637 1.49377 0.86749 1.41840 1.24834 1.04807 1.24403 1.20133 0.91022 0.85580 0.91246 1.84958 1.53867 1.47003 1.35480 1.70483 1.29579 0.99594 1.27478 1.18573 0.96203 0.93639 0.98280 1.19990 1.00185 0.91615 0.99085 1.20388 0.97724 0.98588 0.98518 1.20725 1.02725 0.91731 1.04295 1.17358 0.90909 0.88764 0.93755 1.84758 1.41084 1.64988 1.39733 1.19220 1.03162 0.87114 1.03885 0.90665 0.77173 0.86635 0.86488 0.86342 0.76430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.98 11.05 55.49 0.61 -20.37 15 2 C 0.05 1.35 4.89 -17.49 -0.09 1.27 15 3 Si 0.93 18.64 29.59 -169.99 -5.03 13.61 15 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 15 7 C -0.36 -9.38 9.48 -14.86 -0.14 -9.52 15 8 H 0.11 2.91 7.32 -52.49 -0.38 2.52 15 9 N -0.28 -7.45 2.89 -60.96 -0.18 -7.63 15 10 C 0.42 11.09 8.26 -88.47 -0.73 10.35 15 11 O -0.42 -10.08 11.01 -17.57 -0.19 -10.27 15 12 N -0.54 -14.12 11.30 -12.11 -0.14 -14.26 15 13 C 0.06 1.46 7.22 -84.65 -0.61 0.85 15 14 C -0.09 -1.80 10.10 -39.19 -0.40 -2.19 15 15 C -0.13 -2.31 10.01 -39.61 -0.40 -2.71 15 16 C -0.17 -3.22 9.98 -39.34 -0.39 -3.61 15 17 C 0.14 3.02 6.71 -39.15 -0.26 2.76 15 18 O -0.50 -10.02 12.41 -19.45 -0.24 -10.26 15 19 C -0.02 -0.45 6.82 -83.64 -0.57 -1.02 15 20 H 0.28 6.92 8.31 -40.82 -0.34 6.58 15 21 H 0.37 7.06 9.06 45.56 0.41 7.47 15 22 H 0.12 2.07 8.06 -52.49 -0.42 1.64 15 23 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 24 H 0.12 1.84 8.06 -52.48 -0.42 1.42 15 25 H 0.38 6.20 9.06 45.56 0.41 6.62 15 LS Contribution 230.98 15.07 3.48 3.48 Total: -1.00 -31.57 230.98 -5.23 -36.80 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.04 Total: 12.72 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -3.59 Total: -3.82 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.30 Total: -42.26 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.43 Total: -20.54 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -31.57 -5.23 -36.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892847.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.578 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds