Wall clock time and date at job start Mon Mar 30 2020 02:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86797 * 119.99842 * 2 1 4 4 H 1.48498 * 109.47659 * 269.99937 * 3 2 1 5 5 H 1.48504 * 109.46982 * 30.00336 * 3 2 1 6 6 H 1.48500 * 109.47145 * 149.99713 * 3 2 1 7 7 C 1.38628 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99898 * 0.02562 * 7 2 1 9 9 O 1.34813 * 120.00265 * 180.27436 * 7 2 1 10 10 C 1.35781 * 117.00513 * 174.64406 * 9 7 2 11 11 C 1.39067 * 119.93497 * 185.52454 * 10 9 7 12 12 C 1.37982 * 120.21323 * 179.97438 * 11 10 9 13 13 C 1.38731 * 119.94275 * 0.02562 * 12 11 10 14 14 N 1.39375 * 133.25600 * 179.97438 * 13 12 11 15 15 H 0.97003 * 125.81963 * 0.02562 * 14 13 12 16 16 C 1.34628 * 108.35616 * 180.02562 * 14 13 12 17 17 O 1.21698 * 125.14840 * 179.97438 * 16 14 13 18 18 N 1.34618 * 109.69943 * 359.97438 * 16 14 13 19 19 H 0.97003 * 125.81567 * 180.02562 * 18 16 14 20 20 C 1.39295 * 108.38042 * 0.02562 * 18 16 14 21 21 C 1.38571 * 133.26948 * 180.32307 * 20 18 16 22 22 H 0.96992 * 120.00320 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.89017 * 359.97438 * 11 10 9 24 24 H 1.08005 * 120.02839 * 179.97438 * 12 11 10 25 25 H 1.08005 * 120.10123 * 359.91615 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5473 1.4402 0.7001 7 6 2.0090 -1.2005 -0.0005 8 1 1.4689 -2.1359 -0.0014 9 8 3.3571 -1.2006 0.0051 10 6 3.9731 -2.4054 0.1171 11 6 5.3565 -2.4682 0.2451 12 6 5.9884 -3.6894 0.3598 13 6 5.2424 -4.8590 0.3472 14 7 5.5798 -6.2081 0.4408 15 1 6.4770 -6.5634 0.5389 16 6 4.4480 -6.9339 0.3719 17 8 4.3904 -8.1485 0.4229 18 7 3.3897 -6.1127 0.2381 19 1 2.4625 -6.3887 0.1672 20 6 3.8528 -4.7992 0.2186 21 6 3.2207 -3.5708 0.1099 22 1 -0.4850 0.8399 0.0004 23 1 5.9380 -1.5582 0.2546 24 1 7.0630 -3.7348 0.4587 25 1 2.1460 -3.5211 0.0150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259933092.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:49 Heat of formation + Delta-G solvation = -5.271794 kcal Electronic energy + Delta-G solvation = -14053.782575 eV Core-core repulsion = 11419.971675 eV Total energy + Delta-G solvation = -2633.810900 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.96125 -38.89932 -37.06814 -34.79317 -33.67187 -32.42351 -29.47229 -28.00493 -25.20757 -22.70870 -22.05141 -21.47953 -18.51784 -18.00568 -17.09504 -16.25145 -16.06647 -15.87708 -14.81043 -14.33102 -14.01025 -13.92205 -13.40499 -12.66788 -12.41743 -12.21402 -12.03254 -11.03987 -10.99115 -10.94330 -10.49273 -10.28245 -9.90340 -9.59613 -8.87600 -7.94169 -7.14234 -6.52228 -4.19507 1.69914 1.99250 2.83648 3.16312 3.19482 3.20228 3.33025 3.76761 4.14746 4.21536 4.67828 4.98740 5.02263 5.51906 5.60813 5.83971 5.97520 6.13650 6.47561 6.69390 6.75654 6.97021 7.14178 7.29975 7.53382 7.68059 7.89679 8.53421 8.81922 9.40587 10.54811 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.055849 B = 0.007214 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.232850 B = 3880.490292 C = 4369.684594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.208 6.208 10 C 0.170 3.830 11 C -0.171 4.171 12 C -0.061 4.061 13 C -0.003 4.003 14 N -0.639 5.639 15 H 0.427 0.573 16 C 0.681 3.319 17 O -0.581 6.581 18 N -0.644 5.644 19 H 0.431 0.569 20 C 0.137 3.863 21 C -0.218 4.218 22 H 0.281 0.719 23 H 0.131 0.869 24 H 0.125 0.875 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.037 -4.273 0.521 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.112 6.112 10 C 0.116 3.884 11 C -0.191 4.191 12 C -0.083 4.083 13 C -0.103 4.103 14 N -0.286 5.286 15 H 0.267 0.733 16 C 0.381 3.619 17 O -0.460 6.460 18 N -0.289 5.289 19 H 0.272 0.728 20 C 0.035 3.965 21 C -0.241 4.241 22 H 0.091 0.909 23 H 0.148 0.852 24 H 0.143 0.857 25 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.858 -4.690 0.535 10.038 hybrid contribution 0.003 0.377 -0.013 0.377 sum 8.862 -4.314 0.522 9.870 Atomic orbital electron populations 1.69646 1.05634 1.28740 1.47166 1.24485 0.95039 0.98972 0.95410 0.86165 0.80359 0.81266 0.79051 1.19794 1.20778 1.18160 1.20756 0.76736 0.96707 1.52548 0.87522 1.83605 1.22755 1.24991 1.79855 1.18635 0.91279 0.84889 0.93565 1.19998 0.91858 0.97212 1.10078 1.19573 0.98455 0.88582 1.01651 1.17683 0.92561 0.84668 1.15350 1.42639 1.09173 1.05166 1.71664 0.73255 1.15900 0.80800 0.84748 0.80490 1.91042 1.84768 1.09389 1.60778 1.42924 1.09978 1.05174 1.70848 0.72826 1.17732 0.91268 0.85180 1.02290 1.20098 1.01471 0.88292 1.14226 0.90870 0.85156 0.85695 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.06 13.96 55.48 0.77 -23.28 15 2 C 0.07 1.72 5.49 -17.52 -0.10 1.62 15 3 Si 0.91 20.33 28.62 -169.99 -4.86 15.47 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 15 6 H -0.26 -5.73 7.11 56.52 0.40 -5.32 15 7 C -0.39 -10.26 9.94 30.88 0.31 -9.95 15 8 H 0.11 2.84 5.42 -52.48 -0.28 2.56 15 9 O -0.21 -4.98 8.58 0.00 0.00 -4.98 15 10 C 0.17 3.49 6.65 -39.10 -0.26 3.23 15 11 C -0.17 -2.87 9.98 -39.37 -0.39 -3.27 15 12 C -0.06 -0.89 10.06 -39.49 -0.40 -1.28 15 13 C 0.00 -0.05 7.26 -83.71 -0.61 -0.66 15 14 N -0.64 -9.17 6.15 -14.25 -0.09 -9.26 15 15 H 0.43 4.73 8.96 -40.82 -0.37 4.37 15 16 C 0.68 11.45 9.21 -87.19 -0.80 10.65 15 17 O -0.58 -11.28 18.05 5.19 0.09 -11.19 15 18 N -0.64 -10.22 6.15 -14.31 -0.09 -10.31 15 19 H 0.43 5.84 8.96 -40.82 -0.37 5.47 15 20 C 0.14 2.38 7.25 -83.81 -0.61 1.78 15 21 C -0.22 -4.25 9.18 -39.28 -0.36 -4.61 15 22 H 0.28 7.15 8.31 -40.82 -0.34 6.81 15 23 H 0.13 1.95 8.06 -52.49 -0.42 1.53 15 24 H 0.13 1.35 8.06 -52.48 -0.42 0.93 15 25 H 0.14 2.90 5.62 -52.48 -0.30 2.61 15 LS Contribution 231.26 15.07 3.49 3.49 Total: -1.00 -29.79 231.26 -5.20 -34.98 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -1.29 Total: 7.56 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -3.22 Total: -2.48 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.60 Total: -42.85 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.09 Total: -16.17 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.86 Total: 15.47 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.79 -5.20 -34.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259933092.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.710 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds