Wall clock time and date at job start Mon Mar 30 2020 02:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35800 * 117.00459 * 2 1 4 4 C 1.39053 * 120.90518 * 359.97438 * 3 2 1 5 5 C 1.38721 * 119.49879 * 180.02562 * 4 3 2 6 6 N 1.31458 * 121.45738 * 359.97438 * 5 4 3 7 7 C 1.33591 * 121.60435 * 0.04256 * 6 5 4 8 8 N 1.34237 * 133.20523 * 179.97438 * 7 6 5 9 9 C 1.32380 * 108.97470 * 179.97438 * 8 7 6 10 10 C 1.40069 * 125.15346 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99893 * 179.75370 * 10 9 8 12 12 C 1.40465 * 120.00261 * 0.02562 * 10 9 8 13 13 N 1.30516 * 119.99797 * 359.73087 * 12 10 9 14 14 Si 1.86798 * 119.99968 * 179.73090 * 12 10 9 15 15 H 1.48493 * 109.47326 * 90.00343 * 14 12 10 16 16 H 1.48506 * 109.46545 * 210.00093 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99804 * 14 12 10 18 18 O 1.35039 * 109.69218 * 0.26170 * 9 8 7 19 19 C 1.34993 * 107.79237 * 359.57262 * 18 9 8 20 20 H 1.09004 * 109.47061 * 300.00307 * 1 2 3 21 21 H 1.09001 * 109.46732 * 59.99399 * 1 2 3 22 22 H 1.08993 * 109.47162 * 179.97438 * 1 2 3 23 23 H 1.07993 * 120.25294 * 0.04260 * 4 3 2 24 24 H 1.08000 * 119.27102 * 180.02562 * 5 4 3 25 25 H 0.97000 * 120.00328 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.3069 2.3880 -0.0005 5 6 1.9669 3.6081 -0.0011 6 7 3.2796 3.6780 -0.0006 7 6 4.0392 2.5790 -0.0004 8 7 5.3666 2.3794 -0.0003 9 6 5.6061 1.0774 0.0004 10 6 6.8783 0.4914 0.0012 11 1 6.9774 -0.5841 0.0059 12 6 8.0251 1.3023 0.0018 13 7 7.9054 2.6020 -0.0038 14 14 9.7217 0.5207 0.0104 15 1 10.1759 0.3081 -1.3872 16 1 10.6763 1.4177 0.7101 17 1 9.6617 -0.7849 0.7155 18 8 4.4379 0.3999 -0.0049 19 6 3.4362 1.3048 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2275 2.3534 -0.0003 24 1 1.3895 4.5208 -0.0011 25 1 8.6973 3.1621 -0.0037 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964318.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:05 Heat of formation + Delta-G solvation = -22.292502 kcal Electronic energy + Delta-G solvation = -14271.585636 eV Core-core repulsion = 11637.036662 eV Total energy + Delta-G solvation = -2634.548974 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.41052 -40.54787 -38.64872 -36.16890 -34.38327 -31.96016 -31.28749 -29.15115 -27.67031 -24.54060 -23.58327 -22.50971 -19.74437 -19.38003 -18.59100 -18.00895 -17.46552 -16.82111 -16.35747 -15.66416 -15.42109 -14.91596 -14.50738 -14.06694 -13.88706 -13.53027 -13.11605 -12.93354 -12.62397 -12.35370 -12.00132 -11.71051 -11.11283 -10.97139 -9.98899 -9.71496 -9.44238 -8.81651 -7.09794 0.08996 0.45194 1.38282 1.39309 1.60553 1.95746 2.02280 2.18521 2.38272 2.86194 3.25909 3.29434 3.92643 4.00800 4.27663 4.39720 4.41614 4.63497 4.72580 4.81949 4.97774 5.08390 5.35146 5.54241 5.92780 6.14958 6.33222 6.40233 7.14595 7.66784 8.11617 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.051592 B = 0.008071 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.594021 B = 3468.316487 C = 3995.759584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.203 3.797 4 C -0.302 4.302 5 C 0.162 3.838 6 N -0.546 5.546 7 C 0.282 3.718 8 N -0.576 5.576 9 C 0.328 3.672 10 C -0.417 4.417 11 H 0.123 0.877 12 C 0.021 3.979 13 N -0.741 5.741 14 Si 1.028 2.972 15 H -0.253 1.253 16 H -0.260 1.260 17 H -0.244 1.244 18 O -0.261 6.261 19 C -0.188 4.188 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.122 0.878 23 H 0.189 0.811 24 H 0.205 0.795 25 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 -3.402 0.032 8.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.150 3.850 4 C -0.325 4.325 5 C -0.004 4.004 6 N -0.266 5.266 7 C 0.039 3.961 8 N -0.313 5.313 9 C 0.149 3.851 10 C -0.450 4.450 11 H 0.141 0.859 12 C -0.204 4.204 13 N -0.363 5.363 14 Si 0.843 3.157 15 H -0.177 1.177 16 H -0.184 1.184 17 H -0.167 1.167 18 O -0.162 6.162 19 C -0.243 4.243 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.140 0.860 23 H 0.206 0.794 24 H 0.222 0.778 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.937 -2.232 0.034 7.287 hybrid contribution -0.539 -1.309 -0.008 1.416 sum -7.476 -3.541 0.026 8.272 Atomic orbital electron populations 1.23490 0.75128 1.05959 1.03176 1.86087 1.24778 1.26199 1.88109 1.18221 0.85631 0.86855 0.94315 1.22028 1.02128 0.90059 1.18292 1.23220 0.87895 0.98899 0.90389 1.67059 1.07639 1.29479 1.22375 1.21226 0.91829 0.88024 0.95059 1.71376 1.09364 1.14469 1.36088 1.23167 0.86361 0.84475 0.91115 1.19337 0.85091 0.97049 1.43549 0.85926 1.27440 1.06157 0.94903 0.91859 1.70050 1.34882 1.06797 1.24567 0.84558 0.71621 0.79218 0.80318 1.17674 1.18372 1.16656 1.84553 1.15165 1.36367 1.80083 1.21061 0.89750 0.91578 1.21891 0.90721 0.90731 0.86012 0.79392 0.77799 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.84 113.37 1.12 1.46 15 2 O -0.34 -12.79 10.52 -91.31 -0.96 -13.75 15 3 C 0.20 8.83 6.74 22.74 0.15 8.99 15 4 C -0.30 -10.24 9.12 22.58 0.21 -10.03 15 5 C 0.16 6.03 11.15 84.86 0.95 6.98 15 6 N -0.55 -27.96 10.43 -194.35 -2.03 -29.99 15 7 C 0.28 16.63 8.35 134.71 1.12 17.76 15 8 N -0.58 -36.94 9.38 -307.28 -2.88 -39.82 15 9 C 0.33 20.10 7.69 85.05 0.65 20.75 15 10 C -0.42 -22.69 9.47 23.26 0.22 -22.47 15 11 H 0.12 5.94 7.85 -2.91 -0.02 5.92 15 12 C 0.02 1.06 5.50 85.43 0.47 1.53 15 13 N -0.74 -40.19 11.84 21.91 0.26 -39.93 15 14 Si 1.03 35.05 29.56 68.60 2.03 37.08 15 15 H -0.25 -8.17 7.11 99.48 0.71 -7.46 15 16 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 17 H -0.24 -7.76 7.11 99.48 0.71 -7.06 15 18 O -0.26 -15.62 10.83 -16.78 -0.18 -15.80 15 19 C -0.19 -10.46 7.41 23.22 0.17 -10.28 15 20 H 0.07 1.32 7.71 -2.39 -0.02 1.31 15 21 H 0.07 1.32 7.71 -2.39 -0.02 1.30 15 22 H 0.12 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.19 4.15 6.45 -2.91 -0.02 4.13 15 24 H 0.21 5.18 8.06 -2.91 -0.02 5.15 15 25 H 0.30 14.20 8.29 -92.71 -0.77 13.43 15 Total: -1.00 -79.03 233.36 2.53 -76.50 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.23 Total: 11.03 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 5.06 Total: 14.68 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.65 Total: -109.73 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.14 Total: -29.55 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Total: -79.03 2.53 -76.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964318.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.204 kcal (2) G-P(sol) polarization free energy of solvation -79.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds