Wall clock time and date at job start Mon Mar 30 2020 02:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86802 * 120.00235 * 2 1 4 4 H 1.48499 * 109.47223 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47096 * 120.00397 * 3 2 1 6 6 H 1.48503 * 109.46766 * 239.99782 * 3 2 1 7 7 C 1.40029 * 119.99441 * 179.72369 * 2 1 3 8 8 H 1.08002 * 119.99472 * 156.97285 * 7 2 1 9 9 C 1.40932 * 120.00242 * 336.96990 * 7 2 1 10 10 C 1.35866 * 124.85985 * 339.38999 * 9 7 2 11 11 C 1.51049 * 107.77325 * 179.97438 * 10 9 7 12 12 C 1.50917 * 105.85570 * 0.02562 * 11 10 9 13 13 C 1.39326 * 106.99039 * 359.74416 * 12 11 10 14 14 C 1.39518 * 119.30581 * 179.63621 * 13 12 11 15 15 C 1.37991 * 119.98014 * 0.60284 * 14 13 12 16 16 C 1.38279 * 120.30744 * 359.67242 * 15 14 13 17 17 C 1.37835 * 132.63777 * 179.97438 * 12 11 10 18 18 Cl 1.73597 * 120.01762 * 359.97438 * 17 12 11 19 19 H 0.97000 * 120.00309 * 173.87406 * 1 2 3 20 20 H 1.07998 * 126.11450 * 359.95743 * 10 9 7 21 21 H 1.08999 * 110.17191 * 119.09342 * 11 10 9 22 22 H 1.08997 * 110.17315 * 240.90226 * 11 10 9 23 23 H 1.07996 * 120.00917 * 180.27441 * 14 13 12 24 24 H 1.07999 * 119.84381 * 179.69403 * 15 14 13 25 25 H 1.07999 * 119.97080 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0958 1.6963 1.2124 6 1 3.0958 1.6962 -1.2125 7 6 2.0079 -1.2127 0.0058 8 1 3.0234 -1.2518 -0.3599 9 6 1.3875 -2.3823 0.4890 10 6 0.3109 -2.4046 1.3175 11 6 -0.0327 -3.8504 1.5881 12 6 0.9760 -4.6654 0.8162 13 6 1.8126 -3.7638 0.1615 14 6 2.8544 -4.2494 -0.6292 15 6 3.0397 -5.6099 -0.7663 16 6 2.2009 -6.4973 -0.1174 17 6 1.1681 -6.0230 0.6751 18 17 0.1166 -7.1382 1.4902 19 1 -0.4850 -0.8352 -0.0896 20 1 -0.2066 -1.5428 1.7122 21 1 0.0493 -4.0631 2.6539 22 1 -1.0411 -4.0692 1.2369 23 1 3.5124 -3.5607 -1.1382 24 1 3.8439 -5.9834 -1.3829 25 1 2.3511 -7.5610 -0.2281 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260080916.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:39 Heat of formation + Delta-G solvation = 3.454001 kcal Electronic energy + Delta-G solvation = -12091.700706 eV Core-core repulsion = 9866.684598 eV Total energy + Delta-G solvation = -2225.016108 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.01383 -37.73483 -36.94659 -34.94759 -32.04017 -29.58615 -29.01997 -25.91645 -23.25111 -22.05982 -21.00689 -19.19082 -16.90262 -16.40958 -16.19197 -15.72354 -15.47655 -15.03279 -14.49075 -14.18509 -13.62377 -12.97752 -12.88074 -12.59670 -12.47579 -12.41899 -11.97549 -11.89889 -11.80096 -11.35898 -11.02258 -10.37491 -9.60494 -9.13179 -8.95736 -6.43885 0.06188 0.28592 1.14744 1.43519 1.52193 1.80000 1.96710 2.38586 2.73904 3.35740 3.62020 3.95157 4.06574 4.30729 4.43393 4.65188 4.77816 4.83570 5.00483 5.02214 5.25601 5.42930 5.49879 5.64445 5.84751 5.93865 6.06529 6.46796 6.84134 7.07433 8.18223 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.048651 B = 0.008216 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.384756 B = 3407.029153 C = 3896.280834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C -0.002 4.002 3 Si 1.117 2.883 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.045 3.955 10 C -0.408 4.408 11 C -0.012 4.012 12 C -0.113 4.113 13 C -0.068 4.068 14 C -0.114 4.114 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.028 4.028 18 Cl -0.072 7.072 19 H 0.286 0.714 20 H 0.099 0.901 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.126 0.874 24 H 0.171 0.829 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.762 -9.472 -0.970 10.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.216 4.216 3 Si 0.935 3.065 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.043 3.957 10 C -0.430 4.430 11 C -0.048 4.048 12 C -0.114 4.114 13 C -0.068 4.068 14 C -0.132 4.132 15 C -0.121 4.121 16 C -0.135 4.135 17 C -0.055 4.055 18 Cl -0.043 7.043 19 H 0.098 0.902 20 H 0.117 0.883 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.144 0.856 24 H 0.188 0.812 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.411 -7.973 -0.845 9.151 hybrid contribution -0.383 -1.532 0.162 1.588 sum 4.028 -9.505 -0.684 10.346 Atomic orbital electron populations 1.70489 1.09076 1.33642 1.32697 1.28346 0.95807 1.07136 0.90330 0.83011 0.74648 0.69909 0.78946 1.19969 1.19104 1.18042 1.20342 1.01635 0.94799 1.40842 0.91265 1.18312 0.94111 0.90155 0.93153 1.22982 1.10451 0.94642 1.14963 1.19238 0.95794 0.92025 0.97736 1.20563 0.99143 0.92026 0.99698 1.20413 0.95474 0.94382 0.96550 1.21229 0.96846 0.96759 0.98370 1.21294 1.00064 0.91080 0.99663 1.21320 0.93646 1.01798 0.96751 1.20372 0.96388 0.87941 1.00757 1.98316 1.66067 1.61468 1.78424 0.90153 0.88343 0.91073 0.91575 0.85622 0.81173 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.72 12.52 21.84 0.27 -47.44 15 2 C 0.00 -0.11 5.23 85.28 0.45 0.34 15 3 Si 1.12 44.98 29.99 68.60 2.06 47.04 15 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 5 H -0.27 -10.17 7.11 99.48 0.71 -9.47 15 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 7 C -0.55 -30.39 9.23 23.36 0.22 -30.17 15 8 H 0.07 3.67 7.95 -2.91 -0.02 3.65 15 9 C 0.04 2.47 5.57 -20.52 -0.11 2.35 15 10 C -0.41 -22.20 9.04 25.25 0.23 -21.97 15 11 C -0.01 -0.54 6.57 29.28 0.19 -0.35 15 12 C -0.11 -4.92 6.19 -19.63 -0.12 -5.04 15 13 C -0.07 -3.20 6.15 -20.06 -0.12 -3.33 15 14 C -0.11 -4.39 10.04 22.52 0.23 -4.16 15 15 C -0.10 -3.02 10.02 22.22 0.22 -2.80 15 16 C -0.12 -3.39 9.84 22.35 0.22 -3.17 15 17 C -0.03 -0.99 6.31 22.25 0.14 -0.85 15 18 Cl -0.07 -2.17 28.83 -2.72 -0.08 -2.25 15 19 H 0.29 17.00 6.32 -92.71 -0.59 16.42 15 20 H 0.10 5.72 6.77 -2.91 -0.02 5.70 15 21 H 0.07 3.06 8.14 -2.39 -0.02 3.04 15 22 H 0.07 2.91 8.14 -2.39 -0.02 2.89 15 23 H 0.13 4.63 8.06 -2.91 -0.02 4.61 15 24 H 0.17 3.40 8.06 -2.91 -0.02 3.38 15 25 H 0.17 3.49 8.06 -2.91 -0.02 3.47 15 Total: -1.00 -62.12 238.32 5.17 -56.95 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.38 Total: 14.84 kcal Atomic # 6 Polarization: -70.67 SS G_CDS: 1.53 Total: -69.14 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.27 Total: -47.44 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.06 Total: 47.04 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.08 Total: -2.25 kcal Total: -62.12 5.17 -56.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260080916.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.407 kcal (2) G-P(sol) polarization free energy of solvation -62.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds