Wall clock time and date at job start Mon Mar 30 2020 02:56:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.37537 * 126.55534 * 2 1
4 4 C 1.39991 * 125.96761 * 0.04077 * 3 2 1
5 5 H 1.08004 * 119.99792 * 0.02562 * 4 3 2
6 6 C 1.40237 * 120.00217 * 180.02562 * 4 3 2
7 7 N 1.30689 * 120.00211 * 359.97438 * 6 4 3
8 8 Si 1.86806 * 120.00101 * 180.02562 * 6 4 3
9 9 H 1.48502 * 109.47099 * 89.99761 * 8 6 4
10 10 H 1.48496 * 109.47205 * 209.99900 * 8 6 4
11 11 H 1.48504 * 109.46727 * 329.99739 * 8 6 4
12 12 N 1.32984 * 108.06911 * 179.89470 * 3 2 1
13 13 C 1.32749 * 109.22956 * 0.37895 * 12 3 2
14 14 C 1.36221 * 108.61826 * 359.76076 * 13 12 3
15 15 C 1.50704 * 126.40582 * 180.02562 * 14 13 12
16 16 F 1.39894 * 109.47237 * 269.96562 * 15 14 13
17 17 F 1.39903 * 109.46494 * 29.96751 * 15 14 13
18 18 F 1.39904 * 109.46963 * 149.96121 * 15 14 13
19 19 H 1.09001 * 109.47060 * 269.68880 * 1 2 3
20 20 H 1.09004 * 109.47073 * 29.68369 * 1 2 3
21 21 H 1.09000 * 109.47212 * 149.68451 * 1 2 3
22 22 H 0.96996 * 120.00402 * 180.02562 * 7 6 4
23 23 H 1.07996 * 125.69806 * 179.74559 * 13 12 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2842 1.1048 0.0000
4 6 1.8638 2.4401 0.0008
5 1 0.8094 2.6742 0.0019
6 6 2.8116 3.4737 0.0002
7 7 4.0874 3.1904 -0.0007
8 14 2.2505 5.2555 0.0020
9 1 2.1037 5.7268 1.4025
10 1 3.2574 6.0922 -0.6989
11 1 0.9444 5.3638 -0.6964
12 7 3.5455 0.6831 0.0023
13 6 3.5627 -0.6442 -0.0045
14 6 2.2775 -1.0958 -0.0060
15 6 1.8358 -2.5367 -0.0126
16 9 1.6978 -2.9761 -1.3335
17 9 2.7920 -3.3204 0.6422
18 9 0.6077 -2.6509 0.6477
19 1 -0.3633 -0.0056 1.0277
20 1 -0.3633 0.8928 -0.5089
21 1 -0.3634 -0.8871 -0.5187
22 1 4.7430 3.9053 -0.0008
23 1 4.4478 -1.2629 -0.0084
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260288983.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:41
Heat of formation + Delta-G solvation = -118.207693 kcal
Electronic energy + Delta-G solvation = -15058.246628 eV
Core-core repulsion = 11877.681719 eV
Total energy + Delta-G solvation = -3180.564909 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 220.052 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-51.05399 -48.60299 -48.53643 -42.02261 -35.50575 -34.38469 -31.57793 -28.70108
-27.32512 -25.42403 -22.24935 -21.51165 -19.44465 -19.42747 -18.85041 -18.14043
-17.30113 -16.07169 -15.87524 -15.48584 -15.41124 -15.05127 -14.84179 -14.74365
-14.67343 -14.41731 -13.58117 -13.53459 -13.39488 -12.84298 -12.71805 -12.49265
-11.90658 -11.21375 -10.13749 -10.12230 -9.39193 -8.47950 -6.53432 1.08333
1.45467 1.56936 1.60707 1.70181 2.20559 2.42109 2.52056 3.11917
3.32691 3.44480 3.59469 4.10391 4.36660 4.49030 4.66465 4.84326
5.17770 5.46039 5.86382 6.08857 6.32624 6.79733 7.10885 7.93516
8.47065
Molecular weight = 220.05amu
Principal moments of inertia in cm(-1)
A = 0.056868 B = 0.008736 C = 0.007960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 492.251828 B = 3204.447891 C = 3516.891249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.090 3.910
2 N -0.504 5.504
3 C 0.368 3.632
4 C -0.476 4.476
5 H 0.101 0.899
6 C 0.034 3.966
7 N -0.777 5.777
8 Si 1.001 2.999
9 H -0.263 1.263
10 H -0.271 1.271
11 H -0.250 1.250
12 N -0.554 5.554
13 C 0.049 3.951
14 C -0.257 4.257
15 C 0.568 3.432
16 F -0.185 7.185
17 F -0.174 7.174
18 F -0.185 7.185
19 H 0.069 0.931
20 H 0.088 0.912
21 H 0.078 0.922
22 H 0.284 0.716
23 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.139 -3.520 -0.064 7.077
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 N -0.194 5.194
3 C 0.128 3.872
4 C -0.514 4.514
5 H 0.119 0.881
6 C -0.188 4.188
7 N -0.401 5.401
8 Si 0.820 3.180
9 H -0.187 1.187
10 H -0.196 1.196
11 H -0.174 1.174
12 N -0.274 5.274
13 C -0.110 4.110
14 C -0.369 4.369
15 C 0.512 3.488
16 F -0.167 7.167
17 F -0.155 7.155
18 F -0.166 7.166
19 H 0.088 0.912
20 H 0.107 0.893
21 H 0.096 0.904
22 H 0.094 0.906
23 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges -5.415 -3.051 -0.061 6.216
hybrid contribution -0.668 -0.357 0.014 0.758
sum -6.084 -3.408 -0.046 6.973
Atomic orbital electron populations
1.21856 0.76532 1.03894 1.02934 1.45071 1.06870 1.04436 1.63019
1.20687 0.83814 0.88621 0.94072 1.18768 0.95812 0.86824 1.50032
0.88072 1.26889 0.94082 1.05922 0.91878 1.70103 1.02709 1.36311
1.31009 0.84936 0.79331 0.74309 0.79420 1.18746 1.19578 1.17373
1.71345 1.19112 1.08026 1.28964 1.22529 0.94339 0.93362 1.00785
1.20414 0.93554 0.86808 1.36135 1.16830 0.73831 0.84877 0.73211
1.93174 1.95618 1.91117 1.36787 1.93140 1.64509 1.76510 1.81362
1.93118 1.45373 1.96775 1.81334 0.91203 0.89308 0.90362 0.90595
0.81679
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 3.22 9.96 127.77 1.27 4.49 14
2 N -0.50 -23.67 3.21 -529.62 -1.70 -25.37 14
3 C 0.37 20.01 7.43 133.59 0.99 21.00 14
4 C -0.48 -24.50 9.00 23.18 0.21 -24.29 14
5 H 0.10 4.65 7.15 -2.91 -0.02 4.63 14
6 C 0.03 1.69 5.50 85.35 0.47 2.15 14
7 N -0.78 -41.88 11.90 21.88 0.26 -41.62 14
8 Si 1.00 36.40 29.56 68.60 2.03 38.42 14
9 H -0.26 -9.24 7.11 99.48 0.71 -8.53 14
10 H -0.27 -9.57 7.11 99.48 0.71 -8.86 14
11 H -0.25 -8.53 7.11 99.48 0.71 -7.82 14
12 N -0.55 -31.70 9.40 -194.18 -1.83 -33.53 14
13 C 0.05 2.44 11.46 84.08 0.96 3.40 14
14 C -0.26 -11.81 6.42 41.38 0.27 -11.55 14
15 C 0.57 21.70 3.37 71.24 0.24 21.94 14
16 F -0.19 -6.86 17.30 44.97 0.78 -6.08 14
17 F -0.17 -6.31 17.04 44.97 0.77 -5.54 14
18 F -0.18 -6.56 15.33 44.97 0.69 -5.87 14
19 H 0.07 2.28 8.14 -2.39 -0.02 2.26 14
20 H 0.09 2.94 7.36 -2.38 -0.02 2.92 14
21 H 0.08 2.49 7.11 -2.39 -0.02 2.48 14
22 H 0.28 13.78 8.29 -92.71 -0.77 13.01 14
23 H 0.17 7.21 8.06 -2.91 -0.02 7.19 14
Total: -1.00 -61.81 224.33 6.66 -55.15
By element:
Atomic # 1 Polarization: 6.03 SS G_CDS: 1.25 Total: 7.28 kcal
Atomic # 6 Polarization: 12.74 SS G_CDS: 4.41 Total: 17.15 kcal
Atomic # 7 Polarization: -97.25 SS G_CDS: -3.27 Total: -100.52 kcal
Atomic # 9 Polarization: -19.72 SS G_CDS: 2.23 Total: -17.49 kcal
Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.42 kcal
Total: -61.81 6.66 -55.15 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260288983.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.057 kcal
(2) G-P(sol) polarization free energy of solvation -61.814 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.871 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.208 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds