Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47325 * 2 1 4 4 C 1.50701 * 109.47247 * 305.75417 * 3 2 1 5 5 H 1.07999 * 119.99930 * 117.84376 * 4 3 2 6 6 C 1.37876 * 119.99747 * 297.85111 * 4 3 2 7 7 N 1.31515 * 120.00250 * 183.29752 * 6 4 3 8 8 Si 1.86810 * 120.00027 * 3.29219 * 6 4 3 9 9 H 1.48502 * 109.46838 * 91.83884 * 8 6 4 10 10 H 1.48496 * 109.47138 * 211.83717 * 8 6 4 11 11 H 1.48502 * 109.46949 * 331.84069 * 8 6 4 12 12 N 1.46897 * 109.47213 * 185.75041 * 3 2 1 13 13 C 1.46897 * 111.00109 * 303.43640 * 12 3 2 14 14 C 1.50700 * 109.46867 * 65.75067 * 3 2 1 15 15 C 1.38243 * 120.00256 * 25.96064 * 14 3 2 16 16 C 1.38234 * 120.00109 * 180.02562 * 15 14 3 17 17 C 1.38229 * 119.99993 * 359.95197 * 16 15 14 18 18 C 1.38236 * 120.00227 * 0.28017 * 17 16 15 19 19 C 1.38237 * 119.99976 * 359.50950 * 18 17 16 20 20 H 1.09005 * 109.46809 * 185.17377 * 1 2 3 21 21 H 1.08995 * 109.47112 * 305.17303 * 1 2 3 22 22 H 1.08998 * 109.47089 * 65.17677 * 1 2 3 23 23 H 1.09003 * 109.47762 * 240.00057 * 2 1 3 24 24 H 1.09000 * 109.47410 * 120.00116 * 2 1 3 25 25 H 0.97000 * 120.00449 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00202 * 179.48686 * 12 3 2 27 27 H 1.08994 * 109.47726 * 304.97607 * 13 12 3 28 28 H 1.09006 * 109.47161 * 64.97777 * 13 12 3 29 29 H 1.08999 * 109.47207 * 184.97285 * 13 12 3 30 30 H 1.07997 * 119.99406 * 359.97165 * 15 14 3 31 31 H 1.07998 * 119.99464 * 179.97438 * 16 15 14 32 32 H 1.08005 * 120.00226 * 180.02562 * 17 16 15 33 33 H 1.08003 * 120.00279 * 179.72752 * 18 17 16 34 34 H 1.08002 * 120.00279 * 180.25637 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4248 2.1929 -1.1530 5 1 0.7891 3.0454 -0.9648 6 6 1.6734 1.7909 -2.4482 7 7 1.1899 2.4837 -3.4561 8 14 2.6972 0.2621 -2.7716 9 1 1.8028 -0.9183 -2.8817 10 1 3.4523 0.4310 -4.0390 11 1 3.6500 0.0584 -1.6509 12 7 3.5024 1.4448 -0.1388 13 6 4.1334 0.6522 0.9249 14 6 1.6573 2.1106 1.2955 15 6 1.4550 1.3501 2.4320 16 6 1.1034 1.9628 3.6202 17 6 0.9551 3.3362 3.6721 18 6 1.1527 4.0962 2.5345 19 6 1.5085 3.4839 1.3473 20 1 -0.3633 -1.0235 0.0927 21 1 -0.3633 0.5920 0.8400 22 1 -0.3633 0.4314 -0.9327 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.3651 2.2011 -4.3674 26 1 3.8632 2.3870 -0.1499 27 1 3.8035 1.0198 1.8965 28 1 3.8479 -0.3942 0.8164 29 1 5.2172 0.7425 0.8512 30 1 1.5708 0.2771 2.3914 31 1 0.9450 1.3686 4.5080 32 1 0.6808 3.8150 4.6005 33 1 1.0325 5.1688 2.5740 34 1 1.6669 4.0782 0.4595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = 42.248212 kcal Electronic energy + Delta-G solvation = -15572.573802 eV Core-core repulsion = 13277.915624 eV Total energy + Delta-G solvation = -2294.658178 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37329 -36.37410 -32.32677 -31.60254 -30.44741 -29.68299 -27.04834 -23.67508 -23.37053 -22.08247 -21.47076 -18.94839 -16.53539 -16.30377 -14.94766 -14.87264 -14.29159 -14.06908 -13.65639 -13.25051 -13.04057 -12.77106 -12.31150 -11.92147 -11.79864 -11.45420 -11.15018 -10.75145 -10.61439 -10.52208 -10.33525 -10.09019 -9.92795 -9.27711 -8.90256 -8.45809 -8.30744 -8.07706 -7.03693 -6.00856 -4.08627 1.96670 2.00692 3.50120 3.62946 3.90204 4.39909 4.69381 5.19608 5.39394 5.42414 5.52221 5.56764 5.77406 5.97205 5.99085 6.11961 6.16659 6.20239 6.26498 6.36831 6.46181 6.58598 6.64423 6.71792 6.85985 6.96824 7.04941 7.14094 7.30092 7.44259 7.62247 7.70074 8.17461 8.23621 8.65391 8.97987 9.64587 11.08332 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.012056 C = 0.011182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.987420 B = 2321.920625 C = 2503.489527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.242 3.758 4 C -0.510 4.510 5 H 0.077 0.923 6 C 0.089 3.911 7 N -0.898 5.898 8 Si 0.867 3.133 9 H -0.300 1.300 10 H -0.313 1.313 11 H -0.194 1.194 12 N -0.670 5.670 13 C 0.016 3.984 14 C -0.064 4.064 15 C -0.125 4.125 16 C -0.134 4.134 17 C -0.140 4.140 18 C -0.132 4.132 19 C -0.098 4.098 20 H 0.029 0.971 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.262 0.738 26 H 0.334 0.666 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -1.984 11.062 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.153 3.847 4 C -0.548 4.548 5 H 0.095 0.905 6 C -0.115 4.115 7 N -0.534 5.534 8 Si 0.697 3.303 9 H -0.228 1.228 10 H -0.242 1.242 11 H -0.116 1.116 12 N -0.300 5.300 13 C -0.134 4.134 14 C -0.067 4.067 15 C -0.143 4.143 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.150 4.150 19 C -0.117 4.117 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.068 -2.481 10.418 10.907 hybrid contribution 0.202 -0.160 0.420 0.493 sum 2.269 -2.641 10.838 11.384 Atomic orbital electron populations 1.21661 0.95824 0.98701 1.03189 1.21844 0.96296 0.97573 0.99269 1.18054 0.84520 0.91967 0.90123 1.20746 1.30294 1.15256 0.88460 0.90539 1.24938 0.94020 0.96852 0.95705 1.69944 1.45096 1.39372 0.99014 0.87349 0.82562 0.82213 0.78202 1.22838 1.24168 1.11590 1.61715 1.06394 1.17585 1.44292 1.22256 0.98150 0.99218 0.93744 1.20934 0.95371 0.93937 0.96418 1.21234 1.00567 0.99780 0.92736 1.20997 1.01845 0.94740 0.97619 1.20937 1.02824 0.94155 0.97947 1.21141 1.01201 0.99240 0.93396 1.21340 0.97764 0.95181 0.97389 0.95187 0.93377 0.91021 0.92615 0.94322 0.92822 0.84771 0.96378 0.92660 0.93332 0.86559 0.87307 0.87352 0.87052 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.25 37.16 0.34 -2.44 16 2 C -0.11 -2.35 3.43 -26.73 -0.09 -2.44 16 3 C 0.24 5.25 0.22 -133.91 -0.03 5.22 16 4 C -0.51 -13.28 6.64 -34.44 -0.23 -13.51 16 5 H 0.08 2.18 6.61 -52.49 -0.35 1.84 16 6 C 0.09 2.47 5.45 -17.82 -0.10 2.38 16 7 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 8 Si 0.87 21.57 23.78 -169.99 -4.04 17.53 16 9 H -0.30 -7.58 7.06 56.52 0.40 -7.18 16 10 H -0.31 -8.15 7.11 56.52 0.40 -7.74 16 11 H -0.19 -4.48 4.87 56.52 0.28 -4.20 16 12 N -0.67 -13.83 3.18 -109.57 -0.35 -14.18 16 13 C 0.02 0.28 9.54 60.06 0.57 0.86 16 14 C -0.06 -1.28 3.55 -104.62 -0.37 -1.65 16 15 C -0.12 -2.20 6.48 -39.58 -0.26 -2.45 16 16 C -0.13 -2.11 10.05 -39.59 -0.40 -2.51 16 17 C -0.14 -2.16 10.05 -39.59 -0.40 -2.56 16 18 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 19 C -0.10 -1.91 8.84 -39.58 -0.35 -2.26 16 20 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.95 6.47 -51.93 -0.34 0.62 16 22 H 0.07 1.65 7.27 -51.93 -0.38 1.28 16 23 H 0.06 1.26 3.53 -51.93 -0.18 1.07 16 24 H 0.04 0.72 4.86 -51.93 -0.25 0.47 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.33 6.81 8.80 -39.29 -0.35 6.46 16 27 H 0.02 0.31 5.99 -51.93 -0.31 -0.01 16 28 H 0.05 0.96 6.67 -51.93 -0.35 0.61 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.12 1.96 5.93 -52.49 -0.31 1.65 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.13 2.73 6.73 -52.49 -0.35 2.38 16 LS Contribution 255.12 15.07 3.84 3.84 Total: -1.00 -28.85 255.12 -6.02 -34.86 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.54 Total: 7.99 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -1.70 Total: -23.96 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.42 Total: -40.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.04 Total: 17.53 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.85 -6.02 -34.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.112 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds