Wall clock time and date at job start Mon Mar 30 2020 02:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46756 * 2 1 4 4 C 1.50700 * 109.46845 * 185.25865 * 3 2 1 5 5 H 1.08000 * 119.99590 * 245.24988 * 4 3 2 6 6 C 1.37874 * 120.00604 * 65.24753 * 4 3 2 7 7 N 1.31515 * 119.99915 * 6.20682 * 6 4 3 8 8 Si 1.86797 * 120.00079 * 186.20775 * 6 4 3 9 9 H 1.48491 * 109.47272 * 270.00140 * 8 6 4 10 10 H 1.48498 * 109.47313 * 30.00212 * 8 6 4 11 11 H 1.48507 * 109.47086 * 149.99862 * 8 6 4 12 12 N 1.46903 * 109.47144 * 305.24955 * 3 2 1 13 13 C 1.46892 * 111.00067 * 185.73437 * 12 3 2 14 14 C 1.50696 * 109.47490 * 65.25416 * 3 2 1 15 15 C 1.38230 * 120.00179 * 82.29689 * 14 3 2 16 16 C 1.38236 * 120.00316 * 179.80962 * 15 14 3 17 17 C 1.38235 * 119.99597 * 0.39869 * 16 15 14 18 18 C 1.38240 * 120.00034 * 359.86123 * 17 16 15 19 19 C 1.38234 * 120.00214 * 359.94915 * 18 17 16 20 20 H 1.09003 * 109.47185 * 64.90908 * 1 2 3 21 21 H 1.09007 * 109.47188 * 184.90861 * 1 2 3 22 22 H 1.08999 * 109.47499 * 304.90745 * 1 2 3 23 23 H 1.08995 * 109.46945 * 239.99942 * 2 1 3 24 24 H 1.08997 * 109.47166 * 119.99179 * 2 1 3 25 25 H 0.97003 * 119.99759 * 355.05094 * 7 6 4 26 26 H 1.00906 * 110.99495 * 61.78134 * 12 3 2 27 27 H 1.09005 * 109.47158 * 305.30769 * 13 12 3 28 28 H 1.08992 * 109.47280 * 65.31163 * 13 12 3 29 29 H 1.09006 * 109.47295 * 185.31276 * 13 12 3 30 30 H 1.08005 * 119.99828 * 0.02562 * 15 14 3 31 31 H 1.08001 * 120.00311 * 180.23391 * 16 15 14 32 32 H 1.07997 * 120.00175 * 179.83223 * 17 16 15 33 33 H 1.08003 * 119.99519 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.99889 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5413 1.4446 -0.1302 5 1 4.1531 1.8108 0.6809 6 6 4.1338 0.9790 -1.2848 7 7 3.3905 0.6477 -2.3179 8 14 5.9924 0.8186 -1.3816 9 1 6.5728 2.0870 -1.8908 10 1 6.5358 0.5334 -0.0294 11 1 6.3462 -0.2922 -2.3016 12 7 1.4495 2.1707 -1.1311 13 6 2.0196 3.5197 -1.2440 14 6 1.6466 2.1145 1.2903 15 6 2.4105 1.9284 2.4272 16 6 2.0520 2.5479 3.6099 17 6 0.9249 3.3468 3.6575 18 6 0.1580 3.5286 2.5218 19 6 0.5187 2.9122 1.3382 20 1 -0.3634 0.4358 -0.9307 21 1 -0.3634 -1.0240 0.0879 22 1 -0.3634 0.5881 0.8427 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 2.4234 0.6623 -2.2442 26 1 0.4442 2.2084 -1.0516 27 1 1.9039 4.0437 -0.2952 28 1 3.0784 3.4471 -1.4922 29 1 1.4994 4.0695 -2.0285 30 1 3.2894 1.3018 2.3907 31 1 2.6509 2.4056 4.4973 32 1 0.6432 3.8287 4.5821 33 1 -0.7228 4.1525 2.5592 34 1 -0.0803 3.0546 0.4509 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446969.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:25 Heat of formation + Delta-G solvation = 29.570318 kcal Electronic energy + Delta-G solvation = -15550.814718 eV Core-core repulsion = 13255.606785 eV Total energy + Delta-G solvation = -2295.207933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.28501 -36.33834 -31.90028 -31.49240 -30.33171 -29.69473 -26.28766 -24.24353 -22.55945 -21.83018 -21.48161 -18.92308 -16.97448 -16.32656 -14.67400 -14.60922 -14.13533 -13.71960 -13.67879 -13.32224 -12.84166 -12.53983 -11.98092 -11.82489 -11.61693 -11.30764 -11.09792 -10.76650 -10.64210 -10.53130 -10.26970 -10.05868 -9.85501 -9.67228 -8.58644 -8.29798 -8.20470 -7.84043 -7.31277 -6.01878 -3.93830 1.98216 2.05658 3.48019 3.50806 3.65949 4.43818 4.62099 5.35361 5.41355 5.46090 5.55713 5.69262 5.83530 6.03797 6.10279 6.13270 6.21507 6.30099 6.43391 6.56246 6.62536 6.68881 6.75453 6.96623 7.02388 7.07673 7.12403 7.23883 7.33953 7.49214 7.68881 7.99257 8.34136 8.61391 8.77685 9.15486 9.87774 11.30785 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029797 B = 0.011595 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.468663 B = 2414.329214 C = 2707.670593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.101 4.101 3 C 0.260 3.740 4 C -0.605 4.605 5 H 0.050 0.950 6 C 0.040 3.960 7 N -0.892 5.892 8 Si 1.057 2.943 9 H -0.292 1.292 10 H -0.291 1.291 11 H -0.286 1.286 12 N -0.669 5.669 13 C 0.051 3.949 14 C -0.054 4.054 15 C -0.104 4.104 16 C -0.129 4.129 17 C -0.147 4.147 18 C -0.128 4.128 19 C -0.136 4.136 20 H 0.052 0.948 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.302 0.698 26 H 0.302 0.698 27 H 0.006 0.994 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 2.751 6.963 8.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C 0.171 3.829 4 C -0.644 4.644 5 H 0.068 0.932 6 C -0.171 4.171 7 N -0.529 5.529 8 Si 0.887 3.113 9 H -0.219 1.219 10 H -0.218 1.218 11 H -0.212 1.212 12 N -0.299 5.299 13 C -0.099 4.099 14 C -0.056 4.056 15 C -0.123 4.123 16 C -0.147 4.147 17 C -0.165 4.165 18 C -0.146 4.146 19 C -0.155 4.155 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.025 0.975 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.058 2.076 5.429 6.568 hybrid contribution -1.666 1.034 1.880 2.717 sum -4.725 3.110 7.309 9.242 Atomic orbital electron populations 1.21927 0.98713 0.99911 1.00814 1.21585 0.92426 0.98268 1.01736 1.17885 0.95295 0.88818 0.80927 1.21676 0.88487 1.49067 1.05161 0.93170 1.25434 1.05785 0.93718 0.92119 1.70487 1.10664 1.41998 1.29705 0.83741 0.75594 0.76685 0.75276 1.21853 1.21762 1.21231 1.60962 1.06576 1.16439 1.45889 1.21880 1.01947 0.89125 0.96958 1.21236 0.91988 0.94370 0.98054 1.21222 0.99687 0.99483 0.91880 1.21132 0.97206 0.98449 0.97938 1.20889 0.96746 1.01088 0.97827 1.20946 0.99652 1.00578 0.93436 1.21018 0.97740 0.99340 0.97365 0.92919 0.94360 0.93778 0.90660 0.93508 0.88174 0.87972 0.97510 0.90644 0.94876 0.85490 0.87159 0.87379 0.87364 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.09 37.16 0.34 -2.60 16 2 C -0.10 -2.27 4.84 -26.73 -0.13 -2.40 16 3 C 0.26 5.99 0.19 -133.90 -0.02 5.97 16 4 C -0.61 -15.82 6.07 -34.44 -0.21 -16.03 16 5 H 0.05 1.34 6.35 -52.49 -0.33 1.01 16 6 C 0.04 1.09 4.69 -17.82 -0.08 1.00 16 7 N -0.89 -25.49 12.85 55.43 0.71 -24.77 16 8 Si 1.06 24.62 29.91 -169.99 -5.08 19.54 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.67 -15.03 4.00 -109.56 -0.44 -15.46 16 13 C 0.05 1.11 9.66 60.06 0.58 1.70 16 14 C -0.05 -1.14 3.42 -104.63 -0.36 -1.50 16 15 C -0.10 -2.11 8.85 -39.58 -0.35 -2.46 16 16 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 17 C -0.15 -2.38 10.05 -39.58 -0.40 -2.78 16 18 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 19 C -0.14 -2.56 6.56 -39.58 -0.26 -2.82 16 20 H 0.05 0.97 6.94 -51.93 -0.36 0.61 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.80 6.35 -51.93 -0.33 0.47 16 23 H 0.07 1.88 6.11 -51.93 -0.32 1.56 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.30 8.51 4.74 -40.82 -0.19 8.32 16 26 H 0.30 6.15 5.21 -39.29 -0.20 5.94 16 27 H 0.01 0.14 6.14 -51.93 -0.32 -0.18 16 28 H 0.07 1.89 6.81 -51.93 -0.35 1.53 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.13 2.66 6.84 -52.48 -0.36 2.30 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.11 1.97 6.06 -52.49 -0.32 1.65 16 LS Contribution 261.74 15.07 3.94 3.94 Total: -1.00 -28.02 261.74 -6.98 -34.99 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.42 Total: 8.85 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -1.69 Total: -27.08 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.27 Total: -40.24 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.02 -6.98 -34.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446969.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.564 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds