Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46756 * 2 1 4 4 C 1.50700 * 109.46845 * 185.25865 * 3 2 1 5 5 H 1.08000 * 119.99590 * 245.24988 * 4 3 2 6 6 C 1.37874 * 120.00604 * 65.24753 * 4 3 2 7 7 N 1.31515 * 119.99915 * 6.20682 * 6 4 3 8 8 Si 1.86797 * 120.00079 * 186.20775 * 6 4 3 9 9 H 1.48491 * 109.47272 * 270.00140 * 8 6 4 10 10 H 1.48498 * 109.47313 * 30.00212 * 8 6 4 11 11 H 1.48507 * 109.47086 * 149.99862 * 8 6 4 12 12 N 1.46903 * 109.47144 * 305.24955 * 3 2 1 13 13 C 1.46892 * 111.00067 * 185.73437 * 12 3 2 14 14 C 1.50696 * 109.47490 * 65.25416 * 3 2 1 15 15 C 1.38230 * 120.00179 * 82.29689 * 14 3 2 16 16 C 1.38236 * 120.00316 * 179.80962 * 15 14 3 17 17 C 1.38235 * 119.99597 * 0.39869 * 16 15 14 18 18 C 1.38240 * 120.00034 * 359.86123 * 17 16 15 19 19 C 1.38234 * 120.00214 * 359.94915 * 18 17 16 20 20 H 1.09003 * 109.47185 * 64.90908 * 1 2 3 21 21 H 1.09007 * 109.47188 * 184.90861 * 1 2 3 22 22 H 1.08999 * 109.47499 * 304.90745 * 1 2 3 23 23 H 1.08995 * 109.46945 * 239.99942 * 2 1 3 24 24 H 1.08997 * 109.47166 * 119.99179 * 2 1 3 25 25 H 0.97003 * 119.99759 * 355.05094 * 7 6 4 26 26 H 1.00906 * 110.99495 * 61.78134 * 12 3 2 27 27 H 1.09005 * 109.47158 * 305.30769 * 13 12 3 28 28 H 1.08992 * 109.47280 * 65.31163 * 13 12 3 29 29 H 1.09006 * 109.47295 * 185.31276 * 13 12 3 30 30 H 1.08005 * 119.99828 * 0.02562 * 15 14 3 31 31 H 1.08001 * 120.00311 * 180.23391 * 16 15 14 32 32 H 1.07997 * 120.00175 * 179.83223 * 17 16 15 33 33 H 1.08003 * 119.99519 * 179.97438 * 18 17 16 34 34 H 1.07998 * 119.99889 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5413 1.4446 -0.1302 5 1 4.1531 1.8108 0.6809 6 6 4.1338 0.9790 -1.2848 7 7 3.3905 0.6477 -2.3179 8 14 5.9924 0.8186 -1.3816 9 1 6.5728 2.0870 -1.8908 10 1 6.5358 0.5334 -0.0294 11 1 6.3462 -0.2922 -2.3016 12 7 1.4495 2.1707 -1.1311 13 6 2.0196 3.5197 -1.2440 14 6 1.6466 2.1145 1.2903 15 6 2.4105 1.9284 2.4272 16 6 2.0520 2.5479 3.6099 17 6 0.9249 3.3468 3.6575 18 6 0.1580 3.5286 2.5218 19 6 0.5187 2.9122 1.3382 20 1 -0.3634 0.4358 -0.9307 21 1 -0.3634 -1.0240 0.0879 22 1 -0.3634 0.5881 0.8427 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 2.4234 0.6623 -2.2442 26 1 0.4442 2.2084 -1.0516 27 1 1.9039 4.0437 -0.2952 28 1 3.0784 3.4471 -1.4922 29 1 1.4994 4.0695 -2.0285 30 1 3.2894 1.3018 2.3907 31 1 2.6509 2.4056 4.4973 32 1 0.6432 3.8287 4.5821 33 1 -0.7228 4.1525 2.5592 34 1 -0.0803 3.0546 0.4509 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446969.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = 14.050202 kcal Electronic energy + Delta-G solvation = -15551.487721 eV Core-core repulsion = 13255.606785 eV Total energy + Delta-G solvation = -2295.880936 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83385 -37.94908 -33.85017 -33.21652 -31.78016 -31.16124 -28.04425 -26.10668 -24.35828 -23.29147 -22.95612 -20.68066 -18.73352 -17.95770 -16.29019 -16.22237 -15.63465 -15.57691 -15.21515 -14.97853 -14.30012 -14.26910 -13.61723 -13.34058 -13.30457 -13.05175 -12.73103 -12.61932 -12.32710 -12.16990 -11.92177 -11.84373 -11.53833 -11.36729 -10.43586 -10.26175 -9.69760 -9.35733 -9.11082 -8.08064 -6.03697 0.58569 0.65163 1.56029 1.62587 1.79179 2.67196 3.03087 3.41625 3.83230 4.11491 4.15437 4.23782 4.36242 4.47431 4.51598 4.62945 4.71663 4.75187 4.81589 4.88386 5.14476 5.19444 5.24066 5.25191 5.34611 5.45324 5.62044 5.67664 5.75761 5.84004 6.06868 6.26647 6.44160 6.70418 6.93728 7.17853 7.83260 9.20299 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029797 B = 0.011595 C = 0.010339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.468663 B = 2414.329214 C = 2707.670593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C 0.257 3.743 4 C -0.607 4.607 5 H 0.034 0.966 6 C -0.001 4.001 7 N -0.922 5.922 8 Si 1.094 2.906 9 H -0.285 1.285 10 H -0.280 1.280 11 H -0.288 1.288 12 N -0.678 5.678 13 C 0.062 3.938 14 C -0.078 4.078 15 C -0.131 4.131 16 C -0.128 4.128 17 C -0.139 4.139 18 C -0.123 4.123 19 C -0.144 4.144 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.036 0.964 25 H 0.296 0.704 26 H 0.317 0.683 27 H 0.011 0.989 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 3.979 8.635 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C 0.167 3.833 4 C -0.646 4.646 5 H 0.053 0.947 6 C -0.207 4.207 7 N -0.560 5.560 8 Si 0.920 3.080 9 H -0.212 1.212 10 H -0.206 1.206 11 H -0.214 1.214 12 N -0.309 5.309 13 C -0.088 4.088 14 C -0.080 4.080 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.141 4.141 19 C -0.162 4.162 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.136 0.864 27 H 0.029 0.971 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.479 3.310 7.117 9.037 hybrid contribution -1.267 0.692 1.467 2.058 sum -5.746 4.002 8.584 11.078 Atomic orbital electron populations 1.21780 0.95684 1.01280 1.01282 1.21450 0.95111 0.97610 0.99529 1.17734 0.93566 0.89425 0.82526 1.21927 0.90714 1.47751 1.04176 0.94724 1.26420 1.08630 0.93460 0.92180 1.70561 1.10548 1.44349 1.30535 0.83235 0.72393 0.76680 0.75675 1.21202 1.20579 1.21444 1.60794 1.07513 1.16546 1.46010 1.21718 0.99937 0.89325 0.97843 1.21020 0.93767 0.96092 0.97131 1.21183 0.99616 1.00804 0.93368 1.21410 0.97930 0.97702 0.97544 1.21346 0.95427 0.99718 0.99201 1.21358 1.00473 0.99763 0.92510 1.21103 0.97104 0.99302 0.98718 0.92623 0.92635 0.92878 0.93889 0.94555 0.88860 0.86420 0.97100 0.94295 0.92611 0.87824 0.84660 0.83532 0.83939 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.09 71.98 0.65 -4.57 16 2 C -0.10 -4.47 4.84 30.59 0.15 -4.33 16 3 C 0.26 12.00 0.19 2.03 0.00 12.00 16 4 C -0.61 -32.68 6.07 25.60 0.16 -32.53 16 5 H 0.03 1.92 6.35 -2.91 -0.02 1.90 16 6 C 0.00 -0.07 4.69 84.65 0.40 0.32 16 7 N -0.92 -54.13 12.85 21.45 0.28 -53.85 16 8 Si 1.09 50.88 29.91 68.60 2.05 52.94 16 9 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 12 N -0.68 -30.48 4.00 -500.55 -2.00 -32.48 16 13 C 0.06 2.70 9.66 127.69 1.23 3.94 16 14 C -0.08 -3.24 3.42 -19.87 -0.07 -3.30 16 15 C -0.13 -5.27 8.85 22.27 0.20 -5.07 16 16 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 17 C -0.14 -3.88 10.05 22.27 0.22 -3.66 16 18 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 19 C -0.14 -5.07 6.56 22.27 0.15 -4.93 16 20 H 0.05 1.98 6.94 -2.39 -0.02 1.96 16 21 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 22 H 0.05 1.84 6.35 -2.39 -0.02 1.82 16 23 H 0.04 2.21 6.11 -2.39 -0.01 2.20 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.30 17.18 4.74 -92.71 -0.44 16.74 16 26 H 0.32 12.59 5.21 -89.69 -0.47 12.12 16 27 H 0.01 0.45 6.14 -2.38 -0.01 0.44 16 28 H 0.04 1.97 6.81 -2.39 -0.02 1.96 16 29 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.10 4.52 6.84 -2.91 -0.02 4.50 16 31 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.11 3.84 6.06 -2.91 -0.02 3.82 16 Total: -1.00 -61.44 261.74 4.81 -56.62 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.95 Total: 26.16 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 3.54 Total: -49.38 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.73 Total: -86.34 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.94 kcal Total: -61.44 4.81 -56.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446969.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.673 kcal (2) G-P(sol) polarization free energy of solvation -61.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds