Wall clock time and date at job start Mon Mar 30 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86795 * 119.99531 * 2 1 4 4 H 1.48500 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47351 * 299.99588 * 3 2 1 6 6 H 1.48501 * 109.47557 * 59.99936 * 3 2 1 7 7 C 1.38635 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99986 * 179.97438 * 7 2 1 9 9 O 1.34801 * 120.00016 * 0.28406 * 7 2 1 10 10 C 1.35777 * 116.99919 * 174.66191 * 9 7 2 11 11 C 1.38764 * 120.14085 * 5.58985 * 10 9 7 12 12 C 1.38305 * 120.19927 * 179.76969 * 11 10 9 13 13 C 1.38187 * 120.35117 * 0.51407 * 12 11 10 14 14 C 1.38751 * 119.98662 * 359.74526 * 13 12 11 15 15 N 1.39291 * 133.28260 * 180.02562 * 14 13 12 16 16 H 0.97004 * 125.81566 * 359.93285 * 15 14 13 17 17 C 1.34640 * 108.38058 * 179.97438 * 15 14 13 18 18 O 1.21695 * 125.17807 * 180.02562 * 17 15 14 19 19 N 1.34644 * 109.64573 * 0.02562 * 17 15 14 20 20 H 0.96994 * 125.83451 * 179.97438 * 19 17 15 21 21 C 1.39240 * 120.13700 * 185.87320 * 10 9 7 22 22 H 0.96990 * 120.00440 * 0.02562 * 1 2 3 23 23 H 1.07998 * 119.90214 * 0.02920 * 11 10 9 24 24 H 1.07998 * 119.82138 * 180.25712 * 12 11 10 25 25 H 1.08000 * 120.00802 * 179.76323 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3350 -2.3680 -0.0047 10 6 2.0705 -3.5038 -0.1164 11 6 3.4567 -3.4406 -0.1022 12 6 4.2070 -4.5973 -0.2111 13 6 3.5842 -5.8235 -0.3456 14 6 2.1990 -5.8992 -0.3665 15 7 1.3021 -6.9582 -0.4856 16 1 1.5384 -7.8941 -0.5820 17 6 0.0512 -6.4619 -0.4450 18 8 -0.9680 -7.1223 -0.5230 19 7 0.0995 -5.1236 -0.3050 20 1 -0.6659 -4.5304 -0.2503 21 6 1.4371 -4.7364 -0.2517 22 1 -0.4850 0.8399 -0.0004 23 1 3.9510 -2.4857 -0.0015 24 1 5.2854 -4.5414 -0.1951 25 1 4.1756 -6.7228 -0.4340 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260456530.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:51 Heat of formation + Delta-G solvation = -31.266810 kcal Electronic energy + Delta-G solvation = -14224.592687 eV Core-core repulsion = 11589.654559 eV Total energy + Delta-G solvation = -2634.938129 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.31603 -40.27963 -38.46865 -36.49689 -34.91384 -34.11316 -30.06237 -29.85432 -27.27558 -23.77278 -23.56380 -23.03979 -20.27017 -19.62479 -18.12172 -17.66965 -17.28174 -17.27170 -16.50775 -15.91925 -15.76137 -15.47451 -14.92512 -14.29478 -13.59807 -13.55944 -13.22911 -12.76346 -12.34739 -12.11063 -12.05188 -11.91501 -11.56295 -11.32142 -10.74138 -8.92523 -8.75760 -8.45788 -6.12072 0.49582 0.53404 1.40462 1.47233 1.56616 1.58844 1.84059 2.18833 2.47731 2.80377 3.13302 3.33764 3.96912 4.20917 4.28884 4.55931 4.68417 4.79723 5.10670 5.24297 5.46165 5.66035 5.72868 5.87245 5.99527 6.04450 6.33731 6.99453 7.22239 7.74440 8.76830 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.039532 B = 0.008469 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.119557 B = 3305.192161 C = 3999.861983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.244 1.244 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.407 4.407 8 H 0.113 0.887 9 O -0.227 6.227 10 C 0.135 3.865 11 C -0.236 4.236 12 C -0.045 4.045 13 C -0.168 4.168 14 C 0.128 3.872 15 N -0.620 5.620 16 H 0.448 0.552 17 C 0.673 3.327 18 O -0.609 6.609 19 N -0.634 5.634 20 H 0.432 0.568 21 C -0.010 4.010 22 H 0.271 0.729 23 H 0.136 0.864 24 H 0.169 0.831 25 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.878 -7.325 -0.598 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.167 1.167 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.130 0.870 9 O -0.133 6.133 10 C 0.082 3.918 11 C -0.258 4.258 12 C -0.064 4.064 13 C -0.190 4.190 14 C 0.025 3.975 15 N -0.267 5.267 16 H 0.293 0.707 17 C 0.373 3.627 18 O -0.491 6.491 19 N -0.278 5.278 20 H 0.272 0.728 21 C -0.111 4.111 22 H 0.080 0.920 23 H 0.154 0.846 24 H 0.187 0.813 25 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.799 -7.596 -0.627 12.414 hybrid contribution -0.652 0.849 0.023 1.071 sum 9.147 -6.748 -0.604 11.382 Atomic orbital electron populations 1.70187 1.08115 1.28726 1.48875 1.26576 0.96775 1.02799 0.95934 0.84514 0.78705 0.74844 0.78122 1.16659 1.19937 1.19908 1.21939 0.92919 0.80818 1.52577 0.86980 1.83920 1.35841 1.12478 1.81033 1.18791 0.91590 0.84935 0.96526 1.21130 0.90960 1.01291 1.12371 1.21025 1.00972 0.89595 0.94825 1.20172 0.88282 1.00112 1.10424 1.17954 0.92379 0.83791 1.03386 1.42622 1.03892 1.10189 1.69953 0.70682 1.15995 0.84110 0.81718 0.80903 1.91006 1.32832 1.62980 1.62274 1.42826 1.07732 1.07569 1.69703 0.72761 1.17411 0.83559 0.93296 1.16824 0.91980 0.84622 0.81338 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.29 13.67 21.61 0.30 -53.99 15 2 C -0.02 -1.25 5.49 84.83 0.47 -0.78 15 3 Si 1.02 40.39 29.55 68.60 2.03 42.42 15 4 H -0.24 -8.64 7.11 99.48 0.71 -7.93 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 7 C -0.41 -21.80 9.49 67.91 0.64 -21.15 15 8 H 0.11 5.33 5.21 -2.91 -0.02 5.31 15 9 O -0.23 -12.52 9.76 -22.74 -0.22 -12.75 15 10 C 0.13 6.06 6.66 22.64 0.15 6.21 15 11 C -0.24 -8.65 9.16 22.41 0.21 -8.44 15 12 C -0.04 -1.18 10.03 22.27 0.22 -0.95 15 13 C -0.17 -4.15 10.07 22.38 0.23 -3.92 15 14 C 0.13 4.05 7.25 38.38 0.28 4.33 15 15 N -0.62 -18.16 6.15 -317.47 -1.95 -20.11 15 16 H 0.45 9.34 8.96 -92.71 -0.83 8.51 15 17 C 0.67 25.60 9.21 179.14 1.65 27.25 15 18 O -0.61 -26.35 18.05 -4.33 -0.08 -26.43 15 19 N -0.63 -25.72 6.15 -317.05 -1.95 -27.68 15 20 H 0.43 17.81 8.96 -92.71 -0.83 16.98 15 21 C -0.01 -0.40 7.20 38.49 0.28 -0.12 15 22 H 0.27 14.75 8.31 -92.72 -0.77 13.98 15 23 H 0.14 4.94 5.64 -2.91 -0.02 4.92 15 24 H 0.17 2.92 8.06 -2.91 -0.02 2.89 15 25 H 0.17 2.59 8.06 -2.91 -0.02 2.57 15 Total: -1.00 -70.57 232.42 1.85 -68.73 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.39 Total: 27.39 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 4.12 Total: 2.42 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.61 Total: -101.78 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.30 Total: -39.18 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -70.57 1.85 -68.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456530.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.458 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds