Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00008 * 2 1 4 4 H 1.48501 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47128 * 299.99367 * 3 2 1 6 6 H 1.48493 * 109.47531 * 59.99676 * 3 2 1 7 7 C 1.37878 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00058 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99690 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47006 * 180.02562 * 9 7 2 11 11 N 1.40093 * 126.03621 * 269.97363 * 10 9 7 12 12 C 1.30835 * 108.20440 * 180.02562 * 11 10 9 13 13 C 1.39875 * 108.20384 * 359.78361 * 12 11 10 14 14 C 1.34949 * 126.04157 * 89.99747 * 10 9 7 15 15 C 1.50703 * 126.12355 * 359.94294 * 14 10 9 16 16 F 1.39905 * 109.47157 * 89.99996 * 15 14 10 17 17 F 1.39900 * 109.47159 * 330.00297 * 15 14 10 18 18 F 1.39897 * 109.47274 * 209.99988 * 15 14 10 19 19 H 0.97003 * 119.99735 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47792 * 59.99999 * 9 7 2 21 21 H 1.09006 * 109.47279 * 299.99626 * 9 7 2 22 22 H 1.07995 * 125.89908 * 179.97438 * 12 11 10 23 23 H 1.07999 * 126.03690 * 180.23507 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6126 0.0018 11 7 2.7390 -4.2399 -1.1304 12 6 3.5477 -5.1867 -0.7287 13 6 3.5565 -5.1896 0.6700 14 6 2.7181 -4.2157 1.0936 15 6 2.4180 -3.8633 2.5278 16 9 1.3218 -4.6106 2.9721 17 9 2.1209 -2.4994 2.6207 18 9 3.5325 -4.1530 3.3222 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5566 0.8904 22 1 4.1133 -5.8494 -1.3668 23 1 4.1297 -5.8532 1.3004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517887.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = -77.192616 kcal Electronic energy + Delta-G solvation = -15190.368658 eV Core-core repulsion = 12011.582297 eV Total energy + Delta-G solvation = -3178.786361 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.72599 -47.30963 -47.11495 -40.68871 -33.84380 -31.80884 -30.66252 -27.19833 -25.48177 -23.35948 -20.78515 -20.25702 -18.15020 -17.76527 -17.52927 -16.70295 -15.18986 -14.52394 -14.29024 -14.06947 -13.96958 -13.67093 -13.57539 -13.34719 -13.28576 -13.05999 -12.34516 -11.77358 -11.56027 -11.10497 -10.89356 -10.37106 -10.20665 -9.93089 -9.03751 -8.68686 -8.12894 -6.30763 -4.38029 2.07040 2.73455 3.10973 3.19607 3.27040 3.31129 3.42360 4.07876 4.27170 4.57047 4.79023 5.02760 5.18761 5.78124 5.87279 6.19130 6.67294 6.85260 7.09918 7.44722 7.67867 7.77047 8.17602 8.65129 9.28183 10.77893 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.011484 C = 0.009894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.867925 B = 2437.544119 C = 2829.327259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.246 3.754 10 N -0.293 5.293 11 N -0.264 5.264 12 C 0.018 3.982 13 C -0.234 4.234 14 C -0.018 4.018 15 C 0.536 3.464 16 F -0.177 7.177 17 F -0.149 7.149 18 F -0.173 7.173 19 H 0.269 0.731 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.184 0.816 23 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -7.796 3.847 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.129 3.871 10 N -0.074 5.074 11 N -0.089 5.089 12 C -0.164 4.164 13 C -0.266 4.266 14 C -0.150 4.150 15 C 0.480 3.520 16 F -0.159 7.159 17 F -0.130 7.130 18 F -0.155 7.155 19 H 0.078 0.922 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.201 0.799 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.916 -6.934 2.855 8.460 hybrid contribution 0.713 0.545 0.931 1.293 sum 4.629 -6.390 3.786 8.752 Atomic orbital electron populations 1.69924 1.06066 1.27744 1.48931 1.24900 0.94990 0.99485 0.94178 0.86261 0.80032 0.82318 0.77863 1.19493 1.20578 1.20539 1.21194 0.93686 0.89121 1.53223 0.91567 1.20050 0.86122 0.80432 1.00476 1.49615 1.32063 1.25096 1.00658 1.77462 1.13340 1.09454 1.08643 1.23710 0.99982 0.98571 0.94124 1.21106 1.06277 1.03559 0.95630 1.20776 1.04507 1.01106 0.88640 1.17344 0.74153 0.75624 0.84866 1.93207 1.55059 1.76933 1.90679 1.93385 1.92837 1.30288 1.96505 1.93171 1.53006 1.93436 1.75876 0.92172 0.92133 0.92557 0.79937 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 13.29 55.43 0.74 -24.26 14 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 14 3 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 14 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 14 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 14 7 C -0.53 -14.61 8.60 -34.44 -0.30 -14.90 14 8 H 0.07 1.86 7.81 -52.49 -0.41 1.45 14 9 C 0.25 6.28 5.38 -5.19 -0.03 6.25 14 10 N -0.29 -6.71 3.60 -58.31 -0.21 -6.92 14 11 N -0.26 -5.67 12.58 30.62 0.39 -5.29 14 12 C 0.02 0.31 12.03 -17.36 -0.21 0.10 14 13 C -0.23 -3.99 10.39 -40.01 -0.42 -4.40 14 14 C -0.02 -0.36 6.39 -82.26 -0.53 -0.89 14 15 C 0.54 10.16 3.33 36.01 0.12 10.28 14 16 F -0.18 -3.20 17.30 2.25 0.04 -3.16 14 17 F -0.15 -3.23 14.54 2.25 0.03 -3.20 14 18 F -0.17 -2.93 17.02 2.25 0.04 -2.89 14 19 H 0.27 7.09 8.31 -40.82 -0.34 6.75 14 20 H 0.06 1.62 8.14 -51.93 -0.42 1.20 14 21 H 0.06 1.46 6.99 -51.93 -0.36 1.10 14 22 H 0.18 2.24 8.06 -52.49 -0.42 1.82 14 23 H 0.15 2.01 8.06 -52.49 -0.42 1.59 14 LS Contribution 228.12 15.07 3.44 3.44 Total: -1.00 -28.75 228.12 -3.19 -31.94 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -1.18 Total: -3.98 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.45 Total: -1.80 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.91 Total: -36.46 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 0.11 Total: -9.25 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.75 -3.19 -31.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517887.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.257 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds