Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00008 * 2 1 4 4 H 1.48501 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47128 * 299.99367 * 3 2 1 6 6 H 1.48493 * 109.47531 * 59.99676 * 3 2 1 7 7 C 1.37878 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00058 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99690 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47006 * 180.02562 * 9 7 2 11 11 N 1.40093 * 126.03621 * 269.97363 * 10 9 7 12 12 C 1.30835 * 108.20440 * 180.02562 * 11 10 9 13 13 C 1.39875 * 108.20384 * 359.78361 * 12 11 10 14 14 C 1.34949 * 126.04157 * 89.99747 * 10 9 7 15 15 C 1.50703 * 126.12355 * 359.94294 * 14 10 9 16 16 F 1.39905 * 109.47157 * 89.99996 * 15 14 10 17 17 F 1.39900 * 109.47159 * 330.00297 * 15 14 10 18 18 F 1.39897 * 109.47274 * 209.99988 * 15 14 10 19 19 H 0.97003 * 119.99735 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47792 * 59.99999 * 9 7 2 21 21 H 1.09006 * 109.47279 * 299.99626 * 9 7 2 22 22 H 1.07995 * 125.89908 * 179.97438 * 12 11 10 23 23 H 1.07999 * 126.03690 * 180.23507 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6126 0.0018 11 7 2.7390 -4.2399 -1.1304 12 6 3.5477 -5.1867 -0.7287 13 6 3.5565 -5.1896 0.6700 14 6 2.7181 -4.2157 1.0936 15 6 2.4180 -3.8633 2.5278 16 9 1.3218 -4.6106 2.9721 17 9 2.1209 -2.4994 2.6207 18 9 3.5325 -4.1530 3.3222 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5566 0.8904 22 1 4.1133 -5.8494 -1.3668 23 1 4.1297 -5.8532 1.3004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260517887.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = -95.258573 kcal Electronic energy + Delta-G solvation = -15191.152057 eV Core-core repulsion = 12011.582297 eV Total energy + Delta-G solvation = -3179.569760 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -51.22786 -48.75110 -48.69339 -42.20624 -35.78734 -33.60365 -32.21534 -29.06228 -27.01041 -25.27594 -22.24994 -21.84241 -19.65608 -19.30474 -19.12938 -18.71500 -16.89784 -16.27870 -15.89480 -15.59202 -15.52675 -15.16383 -15.06516 -14.83970 -14.82451 -14.64572 -14.23698 -13.47483 -13.21392 -13.01208 -12.72147 -12.33992 -11.85398 -11.74208 -10.76183 -10.65232 -9.70050 -8.37104 -6.52706 0.53977 1.20506 1.36529 1.37604 1.50226 1.75756 1.81390 2.32429 2.57320 2.95150 3.05429 3.28838 3.79099 4.37363 4.48784 4.77358 4.84335 4.95458 5.46865 5.69286 5.72913 5.83758 6.53040 6.68448 7.17500 8.71577 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.011484 C = 0.009894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.867925 B = 2437.544119 C = 2829.327259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.265 3.735 10 N -0.329 5.329 11 N -0.306 5.306 12 C 0.038 3.962 13 C -0.213 4.213 14 C -0.041 4.041 15 C 0.541 3.459 16 F -0.173 7.173 17 F -0.170 7.170 18 F -0.158 7.158 19 H 0.274 0.726 20 H 0.034 0.966 21 H 0.042 0.958 22 H 0.235 0.765 23 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 -8.611 4.025 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.146 3.854 10 N -0.110 5.110 11 N -0.130 5.130 12 C -0.145 4.145 13 C -0.244 4.244 14 C -0.171 4.171 15 C 0.484 3.516 16 F -0.154 7.154 17 F -0.152 7.152 18 F -0.139 7.139 19 H 0.083 0.917 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.251 0.749 23 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.599 -7.767 3.045 10.047 hybrid contribution 0.264 0.631 0.882 1.116 sum 5.862 -7.136 3.927 10.036 Atomic orbital electron populations 1.70009 1.07370 1.28857 1.49452 1.25738 0.95820 1.02765 0.93568 0.85297 0.78588 0.78219 0.78354 1.19447 1.19657 1.19605 1.21323 0.93112 0.90486 1.53456 0.92879 1.19454 0.86313 0.81245 0.98375 1.49288 1.33730 1.26066 1.01964 1.77418 1.15177 1.11277 1.09142 1.24627 0.97887 0.97032 0.94917 1.21677 1.04382 1.02164 0.96128 1.21219 1.05456 1.02024 0.88416 1.17261 0.74601 0.74728 0.84966 1.93211 1.54998 1.76619 1.90614 1.93338 1.93085 1.32121 1.96606 1.93197 1.52115 1.93205 1.75411 0.91721 0.94760 0.94039 0.74865 0.79155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.56 13.29 21.45 0.28 -52.27 14 2 C 0.02 1.22 5.46 84.65 0.46 1.68 14 3 Si 0.97 43.42 29.54 68.60 2.03 45.45 14 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 14 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 14 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 14 7 C -0.55 -30.54 8.60 25.60 0.22 -30.32 14 8 H 0.05 3.04 7.81 -2.92 -0.02 3.02 14 9 C 0.26 14.01 5.38 85.63 0.46 14.47 14 10 N -0.33 -15.14 3.60 -338.40 -1.22 -16.36 14 11 N -0.31 -12.88 12.58 -57.02 -0.72 -13.59 14 12 C 0.04 1.17 12.03 85.24 1.03 2.19 14 13 C -0.21 -6.49 10.39 21.99 0.23 -6.26 14 14 C -0.04 -1.60 6.39 41.40 0.26 -1.33 14 15 C 0.54 20.05 3.33 71.24 0.24 20.29 14 16 F -0.17 -6.12 17.30 44.97 0.78 -5.34 14 17 F -0.17 -7.49 14.54 44.97 0.65 -6.83 14 18 F -0.16 -5.01 17.02 44.97 0.77 -4.24 14 19 H 0.27 14.57 8.31 -92.71 -0.77 13.80 14 20 H 0.03 1.94 8.14 -2.39 -0.02 1.92 14 21 H 0.04 2.27 6.99 -2.38 -0.02 2.25 14 22 H 0.24 4.47 8.06 -2.91 -0.02 4.45 14 23 H 0.19 4.12 8.06 -2.91 -0.02 4.10 14 Total: -1.00 -62.80 228.12 6.72 -56.09 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: 1.24 Total: -3.61 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 2.90 Total: 0.72 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.65 Total: -82.22 kcal Atomic # 9 Polarization: -18.62 SS G_CDS: 2.20 Total: -16.42 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -62.80 6.72 -56.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517887.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.172 kcal (2) G-P(sol) polarization free energy of solvation -62.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds