Wall clock time and date at job start Mon Mar 30 2020 02:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47345 * 2 1 4 4 C 1.50702 * 109.47049 * 120.00551 * 2 1 3 5 5 C 1.38682 * 120.78581 * 306.37974 * 4 2 1 6 6 C 1.38175 * 119.16388 * 179.97438 * 5 4 2 7 7 N 1.31887 * 120.76728 * 0.02726 * 6 5 4 8 8 C 1.31861 * 121.72400 * 359.67785 * 7 6 5 9 9 C 1.38230 * 120.76200 * 0.58876 * 8 7 6 10 10 C 1.50697 * 120.42121 * 179.72802 * 9 8 7 11 11 H 1.08998 * 109.47520 * 186.36955 * 10 9 8 12 12 C 1.52999 * 109.46883 * 306.37117 * 10 9 8 13 13 C 1.50699 * 109.47227 * 66.36363 * 10 9 8 14 14 H 1.08007 * 120.00182 * 354.24413 * 13 10 9 15 15 C 1.37877 * 120.00211 * 174.23609 * 13 10 9 16 16 N 1.31519 * 119.99951 * 159.51668 * 15 13 10 17 17 Si 1.86796 * 119.99870 * 339.52386 * 15 13 10 18 18 H 1.48500 * 109.46971 * 269.99490 * 17 15 13 19 19 H 1.48492 * 109.47331 * 29.99564 * 17 15 13 20 20 H 1.48507 * 109.47091 * 149.99762 * 17 15 13 21 21 H 1.08999 * 109.46970 * 300.00079 * 1 2 3 22 22 H 1.08997 * 109.46823 * 59.99994 * 1 2 3 23 23 H 1.09003 * 109.47298 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47519 * 239.99775 * 2 1 3 25 25 H 1.09008 * 109.47151 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47165 * 299.99796 * 3 2 1 27 27 H 1.08999 * 109.47151 * 60.00032 * 3 2 1 28 28 H 1.07996 * 120.41529 * 359.96302 * 5 4 2 29 29 H 1.07996 * 119.61878 * 180.02562 * 6 5 4 30 30 H 1.07995 * 119.62139 * 180.28691 * 8 7 6 31 31 H 1.09003 * 109.46857 * 294.50250 * 12 10 9 32 32 H 1.08992 * 109.47576 * 54.50361 * 12 10 9 33 33 H 1.08998 * 109.47453 * 174.51215 * 12 10 9 34 34 H 0.96995 * 119.99640 * 354.93869 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6026 -0.3324 2.4936 6 6 2.0845 -1.0073 3.5988 7 7 2.9428 -1.9993 3.4623 8 6 3.3685 -2.3896 2.2769 9 6 2.9345 -1.7579 1.1265 10 6 3.4308 -2.2063 -0.2239 11 1 3.0679 -1.5213 -0.9902 12 6 4.9607 -2.2126 -0.2285 13 6 2.9219 -3.5956 -0.5102 14 1 2.3800 -4.1395 0.2495 15 6 3.1481 -4.1724 -1.7419 16 7 3.0814 -5.4788 -1.8785 17 14 3.5494 -3.0985 -3.2166 18 1 2.2915 -2.7130 -3.9052 19 1 4.2586 -1.8761 -2.7605 20 1 4.4173 -3.8525 -4.1566 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.9005 0.4796 2.6119 29 1 1.7545 -0.7192 4.5859 30 1 4.0682 -3.2091 2.2042 31 1 5.3286 -1.1924 -0.1188 32 1 5.3241 -2.8210 0.5996 33 1 5.3195 -2.6288 -1.1699 34 1 2.9460 -6.0415 -1.1001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260544755.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:29 Heat of formation + Delta-G solvation = 10.522454 kcal Electronic energy + Delta-G solvation = -15087.508792 eV Core-core repulsion = 12791.474882 eV Total energy + Delta-G solvation = -2296.033910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.93645 -35.78888 -34.65894 -31.84270 -30.34428 -28.85712 -26.92910 -24.87954 -23.75643 -22.97797 -20.11550 -19.42505 -17.58960 -16.44231 -15.61595 -14.51758 -13.95036 -13.79549 -13.63558 -13.51453 -13.23502 -12.72809 -12.60493 -12.07204 -12.02817 -11.90162 -11.24722 -11.03866 -10.97945 -10.82956 -10.51458 -10.29449 -9.85442 -9.73006 -9.09917 -8.84019 -8.75643 -8.30304 -8.09595 -6.48422 -4.11225 1.77593 1.91551 3.36766 3.39078 3.53999 4.42582 4.45927 4.96720 5.04000 5.10796 5.18223 5.45303 5.49408 5.60582 5.73879 5.78573 5.79953 5.99022 6.08128 6.13629 6.23370 6.27384 6.41000 6.46015 6.49841 6.65098 6.67159 6.73809 6.98362 7.09819 7.39466 7.48406 8.03931 8.34290 8.59177 8.85624 9.54985 10.87212 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.026238 B = 0.011560 C = 0.009465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.903689 B = 2421.658353 C = 2957.710325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.047 4.047 5 C -0.172 4.172 6 C 0.064 3.936 7 N -0.494 5.494 8 C 0.100 3.900 9 C -0.071 4.071 10 C 0.046 3.954 11 H 0.039 0.961 12 C -0.138 4.138 13 C -0.597 4.597 14 H 0.057 0.943 15 C 0.038 3.962 16 N -0.900 5.900 17 Si 1.036 2.964 18 H -0.285 1.285 19 H -0.273 1.273 20 H -0.285 1.285 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.023 0.977 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 12.311 3.908 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.055 4.055 5 C -0.191 4.191 6 C -0.092 4.092 7 N -0.203 5.203 8 C -0.057 4.057 9 C -0.073 4.073 10 C 0.027 3.973 11 H 0.057 0.943 12 C -0.195 4.195 13 C -0.634 4.634 14 H 0.075 0.925 15 C -0.168 4.168 16 N -0.533 5.533 17 Si 0.863 3.137 18 H -0.211 1.211 19 H -0.198 1.198 20 H -0.211 1.211 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.469 11.820 3.037 12.292 hybrid contribution -0.706 0.334 0.995 1.265 sum -2.174 12.154 4.032 12.989 Atomic orbital electron populations 1.21806 0.94524 1.02229 1.01144 1.20281 0.95876 0.95585 0.96871 1.21813 1.01214 0.95277 1.01364 1.20105 0.95649 0.95251 0.94517 1.21790 1.02259 1.01872 0.93223 1.22427 0.95283 0.93372 0.98147 1.67605 1.11410 1.13650 1.27616 1.22600 0.98140 0.98118 0.86810 1.21182 0.94683 0.92891 0.98577 1.18296 0.92307 0.97993 0.88750 0.94320 1.22144 0.98111 0.98045 1.01229 1.21857 1.40717 0.98753 1.02076 0.92469 1.25698 0.93576 0.97065 1.00446 1.70802 1.44071 1.04007 1.34375 0.84159 0.77342 0.76079 0.76109 1.21145 1.19804 1.21121 0.93007 0.92571 0.92221 0.88486 0.92659 0.92487 0.92913 0.86024 0.84043 0.83085 0.95815 0.93556 0.93115 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.64 16 2 C -0.07 -1.10 2.95 -91.78 -0.27 -1.37 16 3 C -0.14 -1.84 9.07 37.15 0.34 -1.50 16 4 C -0.05 -0.86 4.80 -104.31 -0.50 -1.36 16 5 C -0.17 -2.77 8.92 -39.44 -0.35 -3.12 16 6 C 0.06 1.08 11.18 -17.55 -0.20 0.88 16 7 N -0.49 -9.74 10.36 -13.25 -0.14 -9.88 16 8 C 0.10 2.10 10.04 -17.54 -0.18 1.92 16 9 C -0.07 -1.50 4.74 -104.48 -0.50 -2.00 16 10 C 0.05 1.05 1.88 -92.93 -0.17 0.87 16 11 H 0.04 0.87 3.76 -51.93 -0.20 0.68 16 12 C -0.14 -2.94 8.46 37.16 0.31 -2.62 16 13 C -0.60 -16.13 8.59 -34.44 -0.30 -16.43 16 14 H 0.06 1.71 7.95 -52.48 -0.42 1.29 16 15 C 0.04 1.06 5.25 -17.82 -0.09 0.97 16 16 N -0.90 -26.95 13.70 55.43 0.76 -26.19 16 17 Si 1.04 24.19 26.32 -169.99 -4.47 19.71 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -5.80 5.87 56.52 0.33 -5.47 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.05 0.64 7.15 -51.93 -0.37 0.27 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.10 1.76 5.35 -51.92 -0.28 1.49 16 25 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.63 7.91 -51.93 -0.41 0.21 16 28 H 0.12 1.59 7.30 -52.49 -0.38 1.21 16 29 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.15 3.18 7.17 -52.49 -0.38 2.80 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.96 6.88 -51.93 -0.36 0.60 16 33 H 0.05 1.10 5.61 -51.93 -0.29 0.81 16 34 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 LS Contribution 271.86 15.07 4.10 4.10 Total: -1.00 -29.37 271.86 -6.17 -35.53 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.84 Total: 2.13 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -1.57 Total: -25.40 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.62 Total: -36.07 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.47 Total: 19.71 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.37 -6.17 -35.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260544755.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.056 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds