Wall clock time and date at job start Mon Mar 30 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48503 * 109.46896 * 240.27121 * 3 2 1 5 5 H 1.48495 * 109.47165 * 0.26561 * 3 2 1 6 6 H 1.48497 * 109.47667 * 120.27327 * 3 2 1 7 7 C 1.38615 * 119.99661 * 180.26796 * 2 1 3 8 8 H 1.07999 * 119.99967 * 179.72965 * 7 2 1 9 9 O 1.34799 * 119.99922 * 359.72658 * 7 2 1 10 10 C 1.35707 * 116.99894 * 179.97438 * 9 7 2 11 11 N 1.30725 * 126.16366 * 359.70207 * 10 9 7 12 12 N 1.39855 * 110.01651 * 179.83860 * 11 10 9 13 13 H 0.97001 * 125.40993 * 180.14303 * 12 11 10 14 14 C 1.37274 * 109.17668 * 0.42861 * 12 11 10 15 15 C 1.39280 * 133.61436 * 179.77877 * 14 12 11 16 16 C 1.36539 * 120.06944 * 180.02562 * 15 14 12 17 17 C 1.39361 * 120.75448 * 359.96240 * 16 15 14 18 18 O 1.35986 * 119.83262 * 180.02562 * 17 16 15 19 19 C 1.37956 * 120.34329 * 0.02562 * 17 16 15 20 20 C 1.39841 * 119.49061 * 0.02562 * 19 17 16 21 21 H 0.97000 * 119.99921 * 359.73330 * 1 2 3 22 22 H 1.08001 * 119.96175 * 359.97438 * 15 14 12 23 23 H 1.08006 * 119.62364 * 179.97438 * 16 15 14 24 24 H 0.96691 * 113.99716 * 269.97976 * 18 17 16 25 25 H 1.07994 * 120.25225 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.0987 1.6991 -1.2158 5 1 1.2850 2.7464 0.0065 6 1 3.1087 1.6935 1.2091 7 6 2.0089 -1.2005 -0.0056 8 1 3.0888 -1.2005 -0.0100 9 8 1.3348 -2.3678 -0.0055 10 6 2.0738 -3.5060 -0.0117 11 7 3.3790 -3.5782 -0.0233 12 7 3.7845 -4.9167 -0.0227 13 1 4.7040 -5.2254 -0.0281 14 6 2.6743 -5.7241 -0.0199 15 6 2.4904 -7.1047 -0.0221 16 6 1.2288 -7.6268 -0.0185 17 6 0.1124 -6.7928 -0.0119 18 8 -1.1356 -7.3330 -0.0079 19 6 0.2666 -5.4219 -0.0093 20 6 1.5532 -4.8739 -0.0140 21 1 -0.4850 0.8400 0.0039 22 1 3.3467 -7.7629 -0.0275 23 1 1.0946 -8.6985 -0.0207 24 1 -1.5003 -7.4868 -0.8900 25 1 -0.5996 -4.7769 -0.0037 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260579856.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:54 Heat of formation + Delta-G solvation = 17.735693 kcal Electronic energy + Delta-G solvation = -13989.922791 eV Core-core repulsion = 11357.109570 eV Total energy + Delta-G solvation = -2632.813221 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.57886 -38.22254 -37.09023 -34.91890 -32.33260 -31.08952 -29.06518 -27.85648 -25.30592 -22.70449 -21.75601 -20.59753 -18.15757 -17.81374 -17.34359 -15.64337 -15.57964 -15.08208 -14.57932 -14.33874 -14.02892 -13.49706 -12.97862 -12.69655 -12.40763 -11.74848 -11.45492 -11.06391 -10.84643 -10.54858 -10.45572 -10.05929 -9.45569 -9.34931 -8.62066 -8.09240 -7.12386 -6.41477 -4.04454 1.39202 1.76392 3.13276 3.16554 3.21424 3.39560 3.42451 3.95896 4.06075 4.50610 4.75878 5.02789 5.09431 5.34900 5.51236 5.70240 5.97365 6.11870 6.28356 6.56466 6.76863 6.91187 6.99013 7.37557 7.87042 7.99370 8.07620 8.51938 9.05313 9.65314 10.76213 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.044161 B = 0.007586 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.891187 B = 3689.937270 C = 4311.459212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.039 3.961 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.384 4.384 8 H 0.096 0.904 9 O -0.156 6.156 10 C 0.287 3.713 11 N -0.337 5.337 12 N -0.513 5.513 13 H 0.432 0.568 14 C 0.144 3.856 15 C -0.151 4.151 16 C -0.089 4.089 17 C 0.029 3.971 18 O -0.497 6.497 19 C -0.042 4.042 20 C -0.156 4.156 21 H 0.271 0.729 22 H 0.124 0.876 23 H 0.127 0.873 24 H 0.378 0.622 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.841 -11.582 -1.644 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.165 4.165 3 Si 0.772 3.228 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.114 0.886 9 O -0.047 6.047 10 C 0.076 3.924 11 N -0.182 5.182 12 N -0.228 5.228 13 H 0.275 0.725 14 C 0.026 3.974 15 C -0.174 4.174 16 C -0.109 4.109 17 C -0.017 4.017 18 O -0.305 6.305 19 C -0.063 4.063 20 C -0.165 4.165 21 H 0.080 0.920 22 H 0.142 0.858 23 H 0.145 0.855 24 H 0.232 0.768 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.347 -10.542 -1.030 11.109 hybrid contribution 0.194 0.179 -0.500 0.566 sum 3.542 -10.363 -1.531 11.058 Atomic orbital electron populations 1.70047 1.05852 1.27829 1.46706 1.25290 0.95940 0.98740 0.96575 0.85683 0.78523 0.79349 0.79245 1.19518 1.20362 1.19510 1.21270 0.92196 0.79861 1.52873 0.88582 1.84189 1.30211 1.10030 1.80232 1.21998 0.88096 0.87647 0.94621 1.77020 1.11849 0.94368 1.34956 1.45499 1.06093 1.02036 1.69214 0.72452 1.18838 0.87868 0.92405 0.98329 1.19501 0.97418 0.90657 1.09799 1.20771 0.91429 0.99607 0.99134 1.17916 0.84241 0.90092 1.09445 1.84901 1.28930 1.83711 1.32966 1.20935 0.96203 0.94079 0.95070 1.19076 0.93365 0.90322 1.13759 0.91963 0.85758 0.85479 0.76832 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.70 13.67 55.48 0.76 -24.94 15 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 15 3 Si 0.95 21.25 29.55 -169.99 -5.02 16.23 15 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.38 -11.22 9.73 30.87 0.30 -10.91 15 8 H 0.10 2.72 7.05 -52.49 -0.37 2.35 15 9 O -0.16 -4.57 9.83 0.27 0.00 -4.57 15 10 C 0.29 7.32 8.08 -14.76 -0.12 7.20 15 11 N -0.34 -7.97 11.50 31.80 0.37 -7.61 15 12 N -0.51 -9.45 7.37 32.38 0.24 -9.21 15 13 H 0.43 6.06 8.96 -182.78 -1.64 4.42 15 14 C 0.14 2.63 7.33 -84.11 -0.62 2.01 15 15 C -0.15 -2.16 10.02 -39.81 -0.40 -2.56 15 16 C -0.09 -1.23 9.90 -39.78 -0.39 -1.62 15 17 C 0.03 0.47 6.69 -39.27 -0.26 0.20 15 18 O -0.50 -6.94 13.50 -19.70 -0.27 -7.21 15 19 C -0.04 -0.81 10.04 -39.09 -0.39 -1.20 15 20 C -0.16 -3.35 6.37 -105.10 -0.67 -4.02 15 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.12 1.35 8.06 -52.49 -0.42 0.92 15 23 H 0.13 1.38 8.06 -52.48 -0.42 0.95 15 24 H 0.38 3.39 9.06 45.56 0.41 3.80 15 25 H 0.13 2.60 8.06 -52.49 -0.42 2.18 15 LS Contribution 237.95 15.07 3.59 3.59 Total: -1.00 -33.64 237.95 -4.98 -38.62 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -2.00 Total: 5.02 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.65 Total: -9.92 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 1.36 Total: -41.76 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.26 Total: -11.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -33.64 -4.98 -38.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260579856.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.355 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds