Wall clock time and date at job start Mon Mar 30 2020 02:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48503 * 109.46896 * 240.27121 * 3 2 1 5 5 H 1.48495 * 109.47165 * 0.26561 * 3 2 1 6 6 H 1.48497 * 109.47667 * 120.27327 * 3 2 1 7 7 C 1.38615 * 119.99661 * 180.26796 * 2 1 3 8 8 H 1.07999 * 119.99967 * 179.72965 * 7 2 1 9 9 O 1.34799 * 119.99922 * 359.72658 * 7 2 1 10 10 C 1.35707 * 116.99894 * 179.97438 * 9 7 2 11 11 N 1.30725 * 126.16366 * 359.70207 * 10 9 7 12 12 N 1.39855 * 110.01651 * 179.83860 * 11 10 9 13 13 H 0.97001 * 125.40993 * 180.14303 * 12 11 10 14 14 C 1.37274 * 109.17668 * 0.42861 * 12 11 10 15 15 C 1.39280 * 133.61436 * 179.77877 * 14 12 11 16 16 C 1.36539 * 120.06944 * 180.02562 * 15 14 12 17 17 C 1.39361 * 120.75448 * 359.96240 * 16 15 14 18 18 O 1.35986 * 119.83262 * 180.02562 * 17 16 15 19 19 C 1.37956 * 120.34329 * 0.02562 * 17 16 15 20 20 C 1.39841 * 119.49061 * 0.02562 * 19 17 16 21 21 H 0.97000 * 119.99921 * 359.73330 * 1 2 3 22 22 H 1.08001 * 119.96175 * 359.97438 * 15 14 12 23 23 H 1.08006 * 119.62364 * 179.97438 * 16 15 14 24 24 H 0.96691 * 113.99716 * 269.97976 * 18 17 16 25 25 H 1.07994 * 120.25225 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.0987 1.6991 -1.2158 5 1 1.2850 2.7464 0.0065 6 1 3.1087 1.6935 1.2091 7 6 2.0089 -1.2005 -0.0056 8 1 3.0888 -1.2005 -0.0100 9 8 1.3348 -2.3678 -0.0055 10 6 2.0738 -3.5060 -0.0117 11 7 3.3790 -3.5782 -0.0233 12 7 3.7845 -4.9167 -0.0227 13 1 4.7040 -5.2254 -0.0281 14 6 2.6743 -5.7241 -0.0199 15 6 2.4904 -7.1047 -0.0221 16 6 1.2288 -7.6268 -0.0185 17 6 0.1124 -6.7928 -0.0119 18 8 -1.1356 -7.3330 -0.0079 19 6 0.2666 -5.4219 -0.0093 20 6 1.5532 -4.8739 -0.0140 21 1 -0.4850 0.8400 0.0039 22 1 3.3467 -7.7629 -0.0275 23 1 1.0946 -8.6985 -0.0207 24 1 -1.5003 -7.4868 -0.8900 25 1 -0.5996 -4.7769 -0.0037 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260579856.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:53 Heat of formation + Delta-G solvation = -11.194274 kcal Electronic energy + Delta-G solvation = -13991.177288 eV Core-core repulsion = 11357.109570 eV Total energy + Delta-G solvation = -2634.067718 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.12335 -39.69151 -38.85925 -36.25895 -34.38065 -32.61677 -30.60108 -29.31376 -27.39655 -24.11596 -23.16935 -22.34710 -19.95028 -19.29031 -18.81322 -17.57879 -16.99772 -16.47499 -16.24617 -16.10403 -15.43769 -15.02548 -14.67278 -14.43478 -13.74803 -13.59774 -12.80994 -12.76498 -12.36668 -12.28053 -12.15368 -11.59176 -11.20308 -11.07780 -10.43915 -9.61596 -8.62775 -8.50879 -6.23778 -0.00227 0.43748 1.32843 1.38798 1.50246 1.70665 1.87828 2.19139 2.67981 2.93361 2.98375 3.43471 3.69829 3.97053 4.15706 4.45132 4.53735 4.70354 5.00288 5.11175 5.26758 5.37295 5.47228 5.74931 5.94555 6.55926 6.79642 6.97548 6.99516 7.63954 8.71152 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.044161 B = 0.007586 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.891187 B = 3689.937270 C = 4311.459212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.017 4.017 3 Si 1.024 2.976 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.412 4.412 8 H 0.093 0.907 9 O -0.202 6.202 10 C 0.253 3.747 11 N -0.354 5.354 12 N -0.497 5.497 13 H 0.452 0.548 14 C 0.139 3.861 15 C -0.124 4.124 16 C -0.075 4.075 17 C 0.054 3.946 18 O -0.502 6.502 19 C -0.080 4.080 20 C -0.194 4.194 21 H 0.276 0.724 22 H 0.176 0.824 23 H 0.176 0.824 24 H 0.405 0.595 25 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -14.335 -1.774 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.215 4.215 3 Si 0.842 3.158 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.110 0.890 9 O -0.096 6.096 10 C 0.041 3.959 11 N -0.196 5.196 12 N -0.218 5.218 13 H 0.300 0.700 14 C 0.021 3.979 15 C -0.146 4.146 16 C -0.096 4.096 17 C 0.008 3.992 18 O -0.314 6.314 19 C -0.101 4.101 20 C -0.203 4.203 21 H 0.085 0.915 22 H 0.193 0.807 23 H 0.194 0.806 24 H 0.263 0.737 25 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.734 -13.358 -1.179 14.221 hybrid contribution -0.240 0.638 -0.472 0.829 sum 4.494 -12.720 -1.651 13.592 Atomic orbital electron populations 1.70176 1.07772 1.29151 1.48545 1.26585 0.96988 1.02458 0.95474 0.84592 0.77355 0.73993 0.79828 1.18352 1.18913 1.18435 1.21585 0.92292 0.80848 1.54218 0.88976 1.84132 1.31799 1.11129 1.82503 1.22498 0.89135 0.88226 0.96060 1.76775 1.11662 0.98069 1.33124 1.45323 1.07406 1.00230 1.68822 0.70011 1.19182 0.86163 0.93698 0.98809 1.20093 0.99481 0.88863 1.06189 1.21271 0.90017 1.01629 0.96644 1.18052 0.85898 0.88856 1.06367 1.84825 1.28243 1.83059 1.35314 1.20935 0.94880 0.95784 0.98461 1.19291 0.95612 0.88938 1.16425 0.91510 0.80681 0.80627 0.73720 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.18 13.67 21.61 0.30 -56.89 15 2 C -0.02 -0.99 5.49 84.82 0.47 -0.53 15 3 Si 1.02 44.68 29.55 68.60 2.03 46.71 15 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 15 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 7 C -0.41 -25.54 9.73 67.91 0.66 -24.88 15 8 H 0.09 5.52 7.05 -2.91 -0.02 5.50 15 9 O -0.20 -12.78 9.83 -21.95 -0.22 -13.00 15 10 C 0.25 13.61 8.08 86.97 0.70 14.31 15 11 N -0.35 -17.26 11.50 -166.91 -1.92 -19.17 15 12 N -0.50 -17.76 7.37 -51.47 -0.38 -18.14 15 13 H 0.45 11.65 8.96 -213.48 -1.91 9.74 15 14 C 0.14 4.80 7.33 39.15 0.29 5.09 15 15 C -0.12 -2.90 10.02 22.12 0.22 -2.68 15 16 C -0.08 -1.67 9.90 22.14 0.22 -1.45 15 17 C 0.05 1.59 6.69 22.47 0.15 1.75 15 18 O -0.50 -12.47 13.50 -93.40 -1.26 -13.73 15 19 C -0.08 -3.12 10.04 22.59 0.23 -2.89 15 20 C -0.19 -8.55 6.37 -20.17 -0.13 -8.68 15 21 H 0.28 15.65 8.31 -92.71 -0.77 14.88 15 22 H 0.18 2.43 8.06 -2.91 -0.02 2.41 15 23 H 0.18 2.39 8.06 -2.91 -0.02 2.36 15 24 H 0.41 5.85 9.06 -74.06 -0.67 5.18 15 25 H 0.11 4.70 8.06 -2.91 -0.02 4.68 15 Total: -1.00 -79.69 237.95 0.03 -79.66 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -1.33 Total: 14.52 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 2.81 Total: -19.96 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -2.00 Total: -94.20 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.48 Total: -26.73 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -79.69 0.03 -79.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260579856.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.462 kcal (2) G-P(sol) polarization free energy of solvation -79.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds