Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46966 * 2 1 4 4 C 1.50702 * 109.46934 * 119.99922 * 2 1 3 5 5 C 1.38227 * 119.61810 * 275.00100 * 4 2 1 6 6 C 1.38626 * 119.15958 * 180.02562 * 5 4 2 7 7 C 1.38670 * 118.42268 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.41834 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47088 * 359.97438 * 8 7 6 10 10 C 1.53005 * 109.46654 * 239.99763 * 8 7 6 11 11 C 1.50701 * 109.47151 * 120.00182 * 8 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.38184 * 119.16324 * 0.27327 * 7 6 5 20 20 N 1.31852 * 119.61790 * 95.02642 * 4 2 1 21 21 H 1.09002 * 109.47215 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47210 * 299.99741 * 1 2 3 23 23 H 1.08998 * 109.47438 * 60.00243 * 1 2 3 24 24 H 1.08993 * 109.46988 * 239.99845 * 2 1 3 25 25 H 1.08994 * 109.47255 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46843 * 300.00122 * 3 2 1 27 27 H 1.09004 * 109.46944 * 60.00096 * 3 2 1 28 28 H 1.07998 * 120.41850 * 359.97438 * 5 4 2 29 29 H 1.08003 * 120.79054 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.47438 * 299.99560 * 10 8 7 31 31 H 1.08996 * 109.47069 * 60.00420 * 10 8 7 32 32 H 1.09004 * 109.46658 * 179.97438 * 10 8 7 33 33 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 34 34 H 1.07995 * 119.61738 * 179.69994 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1612 -0.0132 2.4171 6 6 2.6247 -0.6759 3.5430 7 6 2.9421 -2.0213 3.4331 8 6 3.4492 -2.7858 4.6287 9 1 3.5022 -2.1199 5.4900 10 6 4.8431 -3.3395 4.3261 11 6 2.5108 -3.9255 4.9312 12 1 1.6345 -4.0804 4.3191 13 6 2.7675 -4.7666 5.9930 14 7 3.8344 -4.5777 6.7386 15 14 1.6001 -6.1745 6.3728 16 1 1.5268 -7.0861 5.2027 17 1 2.0973 -6.9250 7.5539 18 1 0.2486 -5.6323 6.6634 19 6 2.7924 -2.6509 2.2121 20 7 2.3442 -1.9897 1.1627 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.9050 1.0348 2.4661 29 1 2.7352 -0.1569 4.4837 30 1 4.7905 -4.0054 3.4648 31 1 5.5218 -2.5152 4.1073 32 1 5.2101 -3.8921 5.1911 33 1 4.0148 -5.1692 7.4858 34 1 3.0420 -3.6973 2.1171 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260579992.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -8.459797 kcal Electronic energy + Delta-G solvation = -14512.395373 eV Core-core repulsion = 12215.538331 eV Total energy + Delta-G solvation = -2296.857042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25761 -37.32194 -35.64689 -33.62677 -32.52047 -29.58610 -27.99404 -27.24106 -25.16731 -24.18190 -22.27858 -20.98373 -18.45873 -17.44343 -17.15258 -16.64189 -15.66870 -15.32841 -14.88799 -14.74820 -14.50729 -14.01982 -13.76982 -13.65008 -13.27263 -12.95052 -12.82246 -12.76738 -12.33331 -12.22551 -12.07628 -11.98855 -11.78736 -11.45269 -11.12132 -10.57039 -10.50261 -10.14907 -9.45778 -8.12602 -6.26870 0.36214 0.50799 1.41400 1.42091 1.50048 2.41313 2.98941 3.15771 3.39643 3.85387 4.17289 4.20824 4.27942 4.36720 4.40470 4.45907 4.70852 4.85445 4.87975 4.94802 4.98163 5.02856 5.09233 5.18715 5.24349 5.32704 5.42106 5.42893 5.49711 5.59870 5.90147 5.93967 6.04935 6.30610 6.80211 7.19453 7.41415 8.91724 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.044731 B = 0.006843 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.810866 B = 4090.705438 C = 4378.545999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 C -0.141 4.141 4 C 0.098 3.902 5 C -0.161 4.161 6 C -0.097 4.097 7 C -0.108 4.108 8 C 0.078 3.922 9 H 0.012 0.988 10 C -0.122 4.122 11 C -0.526 4.526 12 H 0.047 0.953 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.274 1.274 19 C 0.090 3.910 20 N -0.505 5.505 21 H 0.037 0.963 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.031 0.969 31 H 0.024 0.976 32 H 0.062 0.938 33 H 0.263 0.737 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 10.517 -10.126 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.060 4.060 3 C -0.198 4.198 4 C -0.040 4.040 5 C -0.180 4.180 6 C -0.122 4.122 7 C -0.110 4.110 8 C 0.059 3.941 9 H 0.030 0.970 10 C -0.180 4.180 11 C -0.564 4.564 12 H 0.065 0.935 13 C -0.180 4.180 14 N -0.553 5.553 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.066 4.066 20 N -0.214 5.214 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.180 0.820 29 H 0.156 0.844 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.982 9.991 -10.761 15.214 hybrid contribution -0.192 -0.801 1.504 1.714 sum -4.174 9.190 -9.257 13.695 Atomic orbital electron populations 1.21774 0.93056 1.01430 1.03113 1.20059 0.96623 0.96192 0.93166 1.21886 1.00946 0.93451 1.03516 1.21702 0.96380 0.89744 0.96216 1.22161 1.01124 1.02285 0.92455 1.21780 0.97061 0.93716 0.99685 1.21382 0.97453 0.95024 0.97107 1.17670 0.93444 0.93527 0.89477 0.97022 1.21639 0.96851 0.98796 1.00713 1.21297 1.08654 1.12878 1.13539 0.93466 1.25660 0.96767 0.99865 0.95748 1.69982 1.27256 1.39388 1.18632 0.85696 0.79256 0.79474 0.77760 1.19740 1.20566 1.19966 1.22416 0.96358 0.99639 0.88212 1.67456 1.11985 1.09921 1.32076 0.94341 0.92239 0.89675 0.90328 0.93035 0.89953 0.91263 0.81996 0.84424 0.95018 0.95653 0.91879 0.92742 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.18 71.98 0.66 -2.18 16 2 C -0.04 -0.98 3.23 -11.54 -0.04 -1.02 16 3 C -0.14 -2.45 8.62 71.98 0.62 -1.83 16 4 C 0.10 3.19 5.79 42.55 0.25 3.44 16 5 C -0.16 -4.97 9.18 22.36 0.21 -4.76 16 6 C -0.10 -3.59 9.81 22.47 0.22 -3.37 16 7 C -0.11 -4.74 4.74 -19.77 -0.09 -4.83 16 8 C 0.08 3.94 2.49 -12.28 -0.03 3.91 16 9 H 0.01 0.63 7.93 -2.39 -0.02 0.61 16 10 C -0.12 -5.96 8.79 71.98 0.63 -5.33 16 11 C -0.53 -28.98 8.26 25.60 0.21 -28.77 16 12 H 0.05 2.62 7.62 -2.91 -0.02 2.60 16 13 C 0.02 1.04 5.31 84.65 0.45 1.48 16 14 N -0.91 -51.98 11.33 21.45 0.24 -51.74 16 15 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 C 0.09 3.86 9.91 84.67 0.84 4.70 16 20 N -0.51 -19.86 10.27 -183.89 -1.89 -21.75 16 21 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.07 6.49 -2.38 -0.02 1.06 16 28 H 0.16 3.68 6.31 -2.91 -0.02 3.66 16 29 H 0.14 4.66 8.00 -2.91 -0.02 4.64 16 30 H 0.03 1.47 7.40 -2.39 -0.02 1.46 16 31 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 3.37 6.08 -2.38 -0.01 3.35 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.14 6.20 7.58 -2.91 -0.02 6.17 16 Total: -1.00 -61.26 280.47 5.37 -55.90 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.06 Total: 10.51 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 3.92 Total: -38.55 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.65 Total: -73.49 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -61.26 5.37 -55.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260579992.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.439 kcal (2) G-P(sol) polarization free energy of solvation -61.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds