Wall clock time and date at job start Mon Mar 30 2020 02:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99970 * 2 1 4 4 C 1.46903 * 110.99914 * 123.95529 * 2 1 3 5 5 C 1.53006 * 109.46832 * 176.25636 * 4 2 1 6 6 C 1.50701 * 109.47379 * 56.25697 * 4 2 1 7 7 H 1.07997 * 119.99673 * 240.00145 * 6 4 2 8 8 C 1.37876 * 119.99962 * 59.99716 * 6 4 2 9 9 N 1.31517 * 120.00010 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 120.00147 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47012 * 89.99984 * 10 8 6 12 12 H 1.48502 * 109.47453 * 210.00207 * 10 8 6 13 13 H 1.48507 * 109.47166 * 330.00443 * 10 8 6 14 14 C 1.50695 * 109.47180 * 296.25279 * 4 2 1 15 15 C 1.38240 * 120.00011 * 3.56586 * 14 4 2 16 16 C 1.38233 * 120.00128 * 179.78472 * 15 14 4 17 17 C 1.38238 * 119.99796 * 0.44190 * 16 15 14 18 18 C 1.38231 * 120.00070 * 359.81073 * 17 16 15 19 19 C 1.38233 * 120.00009 * 359.97438 * 18 17 16 20 20 H 1.08998 * 109.46899 * 274.26835 * 1 2 3 21 21 H 1.08995 * 109.46838 * 34.27111 * 1 2 3 22 22 H 1.09000 * 109.47037 * 154.27398 * 1 2 3 23 23 H 1.09002 * 109.47172 * 198.77439 * 3 2 1 24 24 H 1.08997 * 109.47146 * 318.77390 * 3 2 1 25 25 H 1.08998 * 109.47104 * 78.77673 * 3 2 1 26 26 H 1.08998 * 109.47057 * 59.99972 * 5 4 2 27 27 H 1.08996 * 109.47022 * 299.99966 * 5 4 2 28 28 H 1.09001 * 109.47026 * 179.97438 * 5 4 2 29 29 H 0.97001 * 120.00158 * 180.02562 * 9 8 6 30 30 H 1.07998 * 119.99702 * 359.97438 * 15 14 4 31 31 H 1.07998 * 120.00439 * 180.27405 * 16 15 14 32 32 H 1.08004 * 120.00100 * 179.83331 * 17 16 15 33 33 H 1.07999 * 119.99977 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.99914 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5221 -0.8219 1.0520 6 6 1.4387 -2.1660 1.1013 7 1 0.8492 -2.5342 1.9280 8 6 1.6818 -2.9766 0.0129 9 7 2.4000 -2.5282 -0.9936 10 14 0.9923 -4.7120 -0.0318 11 1 -0.3535 -4.6940 -0.6593 12 1 1.8964 -5.5837 -0.8244 13 1 0.8857 -5.2382 1.3528 14 6 1.5887 -0.0968 2.4251 15 6 0.7717 1.0179 2.3966 16 6 0.3949 1.6291 3.5779 17 6 0.8427 1.1311 4.7872 18 6 1.6640 0.0195 4.8154 19 6 2.0371 -0.5943 3.6344 20 1 -0.3633 0.0765 1.0248 21 1 -0.3633 0.8492 -0.5787 22 1 -0.3633 -0.9258 -0.4461 23 1 3.0340 1.3620 -0.3308 24 1 1.4041 1.9876 -0.6772 25 1 1.9389 1.7823 1.0080 26 1 3.9247 0.1906 1.0782 27 1 3.8162 -1.3059 0.1207 28 1 3.9127 -1.3899 1.8963 29 1 2.5707 -3.0984 -1.7595 30 1 0.4252 1.4094 1.4516 31 1 -0.2470 2.4973 3.5559 32 1 0.5506 1.6102 5.7100 33 1 2.0135 -0.3698 5.7602 34 1 2.6784 -1.4630 3.6565 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:13 Heat of formation + Delta-G solvation = 50.737924 kcal Electronic energy + Delta-G solvation = -15602.634546 eV Core-core repulsion = 13308.344509 eV Total energy + Delta-G solvation = -2294.290037 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.09176 -37.88617 -34.64762 -32.71513 -31.28445 -29.97061 -28.64624 -26.49937 -24.97957 -23.32411 -22.94161 -20.64864 -18.26131 -17.63391 -16.60902 -16.32780 -15.61379 -15.33645 -15.24890 -14.73396 -14.41764 -14.20039 -13.48714 -13.14614 -12.90547 -12.81502 -12.70536 -12.58488 -12.37897 -12.20758 -12.07704 -12.03233 -11.54388 -11.33917 -10.90672 -10.40115 -9.59664 -9.25434 -8.44545 -7.87177 -6.09153 0.63504 0.70268 1.42085 1.45510 1.52741 2.48916 3.08380 3.24183 3.80477 4.18347 4.22625 4.29442 4.39209 4.58693 4.66485 4.75347 4.82717 4.85867 4.97350 5.02412 5.13556 5.20828 5.24305 5.32371 5.36945 5.44828 5.71560 5.72762 5.76410 5.90135 6.03238 6.32031 6.38397 6.73637 6.93729 7.17527 7.60012 9.09406 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.011769 C = 0.010241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.134041 B = 2378.604183 C = 2733.548255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.523 5.523 3 C 0.007 3.993 4 C 0.267 3.733 5 C -0.113 4.113 6 C -0.525 4.525 7 H 0.038 0.962 8 C 0.047 3.953 9 N -0.866 5.866 10 Si 0.933 3.067 11 H -0.282 1.282 12 H -0.284 1.284 13 H -0.275 1.275 14 C -0.089 4.089 15 C -0.156 4.156 16 C -0.129 4.129 17 C -0.140 4.140 18 C -0.128 4.128 19 C -0.131 4.131 20 H 0.033 0.967 21 H 0.059 0.941 22 H 0.031 0.969 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.021 0.979 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.254 0.746 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.396 7.156 7.071 10.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.246 5.246 3 C -0.141 4.141 4 C 0.179 3.821 5 C -0.171 4.171 6 C -0.564 4.564 7 H 0.056 0.944 8 C -0.157 4.157 9 N -0.502 5.502 10 Si 0.759 3.241 11 H -0.208 1.208 12 H -0.210 1.210 13 H -0.200 1.200 14 C -0.091 4.091 15 C -0.174 4.174 16 C -0.147 4.147 17 C -0.158 4.158 18 C -0.146 4.146 19 C -0.150 4.150 20 H 0.052 0.948 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.146 6.881 6.425 9.656 hybrid contribution -0.476 -0.913 0.301 1.073 sum -2.622 5.968 6.725 9.366 Atomic orbital electron populations 1.22319 0.89240 0.99721 0.99342 1.62306 1.06487 1.10808 1.44951 1.22835 1.00202 0.90895 1.00162 1.17672 0.92083 0.90926 0.81412 1.21653 0.96337 0.97593 1.01510 1.20930 1.34539 0.97258 1.03678 0.94374 1.25423 0.94925 1.00003 0.95320 1.70135 1.37290 1.35930 1.06810 0.85984 0.78313 0.82005 0.77749 1.20793 1.20993 1.20013 1.21205 0.95565 0.94679 0.97679 1.21738 0.99339 0.96631 0.99644 1.21399 1.00459 1.00568 0.92283 1.21345 0.98829 0.97086 0.98506 1.21385 0.98739 0.96647 0.97823 1.21085 1.01125 1.00055 0.92706 0.94842 0.92249 0.95008 0.93646 0.91688 0.94313 0.96000 0.91490 0.95155 0.93689 0.84791 0.84123 0.83600 0.84414 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.80 7.88 127.69 1.01 2.80 16 2 N -0.52 -24.31 4.15 -907.28 -3.76 -28.07 16 3 C 0.01 0.27 7.99 127.69 1.02 1.29 16 4 C 0.27 12.92 0.16 2.04 0.00 12.92 16 5 C -0.11 -5.48 7.80 71.98 0.56 -4.92 16 6 C -0.53 -28.25 6.68 25.60 0.17 -28.08 16 7 H 0.04 2.12 7.69 -2.91 -0.02 2.10 16 8 C 0.05 2.56 5.23 84.65 0.44 3.00 16 9 N -0.87 -48.45 10.80 21.45 0.23 -48.22 16 10 Si 0.93 43.42 29.54 68.60 2.03 45.45 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C -0.09 -3.82 4.07 -19.87 -0.08 -3.90 16 15 C -0.16 -5.80 5.59 22.27 0.12 -5.68 16 16 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 17 C -0.14 -3.99 10.05 22.27 0.22 -3.77 16 18 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 19 C -0.13 -5.21 8.85 22.27 0.20 -5.01 16 20 H 0.03 1.42 4.80 -2.39 -0.01 1.41 16 21 H 0.06 2.16 7.49 -2.39 -0.02 2.14 16 22 H 0.03 1.52 7.87 -2.39 -0.02 1.50 16 23 H 0.04 1.83 7.17 -2.39 -0.02 1.81 16 24 H 0.06 2.21 7.56 -2.39 -0.02 2.20 16 25 H 0.04 1.45 4.55 -2.39 -0.01 1.44 16 26 H 0.02 0.96 6.75 -2.39 -0.02 0.94 16 27 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 28 H 0.03 1.41 7.18 -2.39 -0.02 1.39 16 29 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.13 4.88 3.62 -2.91 -0.01 4.87 16 31 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.11 4.39 7.35 -2.91 -0.02 4.37 16 Total: -1.00 -59.47 260.78 3.69 -55.78 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.08 Total: 13.99 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 4.11 Total: -38.93 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -3.53 Total: -76.29 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -59.47 3.69 -55.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.518 kcal (2) G-P(sol) polarization free energy of solvation -59.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds