Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00079 * 2 1 4 4 C 1.46901 * 110.99880 * 123.95041 * 2 1 3 5 5 C 1.52999 * 109.47083 * 65.10969 * 4 2 1 6 6 C 1.50699 * 109.47009 * 185.10724 * 4 2 1 7 7 H 1.08000 * 120.00234 * 144.74463 * 6 4 2 8 8 C 1.37872 * 120.00238 * 324.74677 * 6 4 2 9 9 N 1.31515 * 120.00475 * 172.11497 * 8 6 4 10 10 Si 1.86801 * 120.00141 * 352.11253 * 8 6 4 11 11 H 1.48502 * 109.47111 * 93.51746 * 10 8 6 12 12 H 1.48495 * 109.47531 * 213.52346 * 10 8 6 13 13 H 1.48498 * 109.46918 * 333.52494 * 10 8 6 14 14 C 1.50696 * 109.47317 * 305.10822 * 4 2 1 15 15 C 1.38242 * 119.99966 * 165.85318 * 14 4 2 16 16 C 1.38235 * 119.99751 * 180.02562 * 15 14 4 17 17 C 1.38231 * 120.00003 * 359.95658 * 16 15 14 18 18 C 1.38234 * 120.00403 * 0.27892 * 17 16 15 19 19 C 1.38236 * 120.00077 * 345.87241 * 14 4 2 20 20 H 1.09006 * 109.46937 * 287.61462 * 1 2 3 21 21 H 1.09006 * 109.47064 * 47.60607 * 1 2 3 22 22 H 1.08988 * 109.47525 * 167.61200 * 1 2 3 23 23 H 1.09003 * 109.47154 * 208.31019 * 3 2 1 24 24 H 1.08994 * 109.47321 * 328.30750 * 3 2 1 25 25 H 1.09006 * 109.47409 * 88.30693 * 3 2 1 26 26 H 1.08993 * 109.47183 * 301.43619 * 5 4 2 27 27 H 1.09000 * 109.46778 * 61.43036 * 5 4 2 28 28 H 1.09003 * 109.47491 * 181.43038 * 5 4 2 29 29 H 0.96999 * 120.00188 * 180.02562 * 9 8 6 30 30 H 1.07996 * 119.99665 * 0.02562 * 15 14 4 31 31 H 1.08000 * 119.99489 * 179.97438 * 16 15 14 32 32 H 1.08004 * 119.99721 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.00290 * 179.72596 * 18 17 16 34 34 H 1.08002 * 119.99938 * 0.02562 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6113 -2.2388 0.9823 6 6 3.4966 -0.6397 1.1766 7 1 4.0110 -0.6030 2.1255 8 6 4.2134 -0.5710 0.0009 9 7 5.5012 -0.3059 0.0303 10 14 3.3555 -0.8545 -1.6341 11 1 2.9232 0.4491 -2.1989 12 1 4.2928 -1.5162 -2.5768 13 1 2.1682 -1.7219 -1.4261 14 6 1.4126 -0.2272 2.4187 15 6 1.5218 -0.9564 3.5881 16 6 0.9867 -0.4625 4.7631 17 6 0.3432 0.7609 4.7689 18 6 0.2297 1.4878 3.5986 19 6 0.7684 0.9958 2.4244 20 1 -0.3633 0.3110 0.9795 21 1 -0.3633 0.6929 -0.7590 22 1 -0.3634 -1.0036 -0.2204 23 1 2.9703 1.3864 -0.4874 24 1 1.3094 2.0240 -0.5399 25 1 2.0973 1.7216 1.0273 26 1 0.5264 -2.3276 0.9284 27 1 2.0541 -2.6352 0.0686 28 1 1.9800 -2.8028 1.8391 29 1 6.0054 -0.2572 -0.7969 30 1 2.0251 -1.9119 3.5836 31 1 1.0716 -1.0323 5.6765 32 1 -0.0752 1.1466 5.6868 33 1 -0.2769 2.4416 3.6022 34 1 0.6824 1.5652 1.5107 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260587761.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = 73.653699 kcal Electronic energy + Delta-G solvation = -15761.773315 eV Core-core repulsion = 13468.476981 eV Total energy + Delta-G solvation = -2293.296334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.84996 -36.73772 -32.60003 -31.57895 -30.05681 -28.84271 -27.35554 -24.63039 -23.36244 -22.09328 -21.72240 -19.09295 -16.62883 -16.51911 -15.08159 -14.90054 -14.26581 -13.96489 -13.65044 -13.24320 -12.88540 -12.79446 -12.25629 -12.03047 -11.56505 -11.44493 -11.24094 -11.00930 -10.86851 -10.61239 -10.22618 -10.02819 -9.73062 -9.43400 -9.24030 -8.44351 -8.29799 -7.87183 -7.17339 -6.01930 -4.10214 1.94343 2.01403 3.63101 3.68026 3.90372 4.38939 4.66421 4.89365 5.31327 5.41514 5.43883 5.53877 5.69155 5.83988 5.98423 6.05856 6.13219 6.16045 6.34772 6.41655 6.51715 6.52821 6.60393 6.68547 6.77548 6.93889 6.99861 7.04620 7.19762 7.28195 7.59261 7.61424 7.87778 8.11862 8.54406 8.95364 9.60266 11.05763 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.035699 B = 0.012450 C = 0.011459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.138727 B = 2248.482519 C = 2442.877444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.532 5.532 3 C 0.013 3.987 4 C 0.238 3.762 5 C -0.132 4.132 6 C -0.517 4.517 7 H 0.075 0.925 8 C 0.077 3.923 9 N -0.896 5.896 10 Si 0.947 3.053 11 H -0.292 1.292 12 H -0.338 1.338 13 H -0.256 1.256 14 C -0.052 4.052 15 C -0.113 4.113 16 C -0.125 4.125 17 C -0.145 4.145 18 C -0.128 4.128 19 C -0.145 4.145 20 H 0.046 0.954 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.263 0.737 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 1.298 3.804 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 N -0.257 5.257 3 C -0.134 4.134 4 C 0.150 3.850 5 C -0.190 4.190 6 C -0.554 4.554 7 H 0.093 0.907 8 C -0.127 4.127 9 N -0.532 5.532 10 Si 0.783 3.217 11 H -0.220 1.220 12 H -0.271 1.271 13 H -0.182 1.182 14 C -0.053 4.053 15 C -0.131 4.131 16 C -0.143 4.143 17 C -0.164 4.164 18 C -0.146 4.146 19 C -0.162 4.162 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.378 1.110 3.287 10.942 hybrid contribution -0.495 0.393 -0.060 0.635 sum -10.872 1.503 3.226 11.440 Atomic orbital electron populations 1.22811 0.89629 1.01662 1.00598 1.62019 1.06034 1.13879 1.43735 1.22742 1.00759 0.88530 1.01400 1.18271 0.95452 0.90090 0.81212 1.22169 0.97862 0.97041 1.01942 1.20631 0.86582 1.53353 0.94866 0.90730 1.25113 0.94570 0.92577 1.00396 1.69985 1.07935 1.46904 1.28328 0.85906 0.77155 0.78488 0.80106 1.21952 1.27101 1.18202 1.20916 0.93168 0.93627 0.97625 1.21035 0.99537 1.00439 0.92118 1.21055 0.99248 0.96275 0.97766 1.20909 1.01967 0.95893 0.97588 1.21012 1.00963 0.99416 0.93214 1.21655 0.99296 0.96669 0.98623 0.93636 0.92811 0.92067 0.90665 0.94083 0.92647 0.95501 0.91806 0.93009 0.92747 0.86115 0.87033 0.87277 0.87173 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 8.44 60.06 0.51 0.52 16 2 N -0.53 -11.46 1.29 -238.12 -0.31 -11.77 16 3 C 0.01 0.27 6.61 60.07 0.40 0.67 16 4 C 0.24 5.38 0.15 -133.91 -0.02 5.36 16 5 C -0.13 -2.79 7.68 37.16 0.29 -2.50 16 6 C -0.52 -14.03 7.75 -34.44 -0.27 -14.29 16 7 H 0.07 2.25 8.05 -52.49 -0.42 1.83 16 8 C 0.08 2.18 4.45 -17.82 -0.08 2.10 16 9 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 10 Si 0.95 23.93 22.67 -169.99 -3.85 20.07 16 11 H -0.29 -7.26 6.28 56.52 0.36 -6.90 16 12 H -0.34 -8.92 7.11 56.52 0.40 -8.52 16 13 H -0.26 -6.18 4.93 56.52 0.28 -5.90 16 14 C -0.05 -1.06 4.08 -104.62 -0.43 -1.49 16 15 C -0.11 -2.16 9.08 -39.58 -0.36 -2.52 16 16 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 17 C -0.15 -2.28 10.05 -39.59 -0.40 -2.68 16 18 C -0.13 -2.10 10.05 -39.58 -0.40 -2.49 16 19 C -0.14 -2.70 5.73 -39.58 -0.23 -2.93 16 20 H 0.05 0.78 4.45 -51.93 -0.23 0.55 16 21 H 0.05 0.85 7.72 -51.93 -0.40 0.45 16 22 H 0.06 1.06 6.84 -51.94 -0.36 0.70 16 23 H 0.07 1.81 4.79 -51.93 -0.25 1.56 16 24 H 0.04 0.74 7.54 -51.93 -0.39 0.35 16 25 H 0.06 1.18 4.88 -51.93 -0.25 0.93 16 26 H 0.03 0.50 6.65 -51.93 -0.35 0.16 16 27 H 0.06 1.42 5.38 -51.93 -0.28 1.14 16 28 H 0.05 1.03 6.69 -51.93 -0.35 0.68 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.12 2.26 6.76 -52.49 -0.35 1.91 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.14 2.44 3.65 -52.49 -0.19 2.25 16 LS Contribution 246.21 15.07 3.71 3.71 Total: -1.00 -29.95 246.21 -5.45 -35.41 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.39 Total: 1.60 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -1.38 Total: -22.73 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.47 Total: -38.06 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -3.85 Total: 20.07 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.95 -5.45 -35.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587761.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.062 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds