Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00079 * 2 1 4 4 C 1.46901 * 110.99880 * 123.95041 * 2 1 3 5 5 C 1.52999 * 109.47083 * 65.10969 * 4 2 1 6 6 C 1.50699 * 109.47009 * 185.10724 * 4 2 1 7 7 H 1.08000 * 120.00234 * 144.74463 * 6 4 2 8 8 C 1.37872 * 120.00238 * 324.74677 * 6 4 2 9 9 N 1.31515 * 120.00475 * 172.11497 * 8 6 4 10 10 Si 1.86801 * 120.00141 * 352.11253 * 8 6 4 11 11 H 1.48502 * 109.47111 * 93.51746 * 10 8 6 12 12 H 1.48495 * 109.47531 * 213.52346 * 10 8 6 13 13 H 1.48498 * 109.46918 * 333.52494 * 10 8 6 14 14 C 1.50696 * 109.47317 * 305.10822 * 4 2 1 15 15 C 1.38242 * 119.99966 * 165.85318 * 14 4 2 16 16 C 1.38235 * 119.99751 * 180.02562 * 15 14 4 17 17 C 1.38231 * 120.00003 * 359.95658 * 16 15 14 18 18 C 1.38234 * 120.00403 * 0.27892 * 17 16 15 19 19 C 1.38236 * 120.00077 * 345.87241 * 14 4 2 20 20 H 1.09006 * 109.46937 * 287.61462 * 1 2 3 21 21 H 1.09006 * 109.47064 * 47.60607 * 1 2 3 22 22 H 1.08988 * 109.47525 * 167.61200 * 1 2 3 23 23 H 1.09003 * 109.47154 * 208.31019 * 3 2 1 24 24 H 1.08994 * 109.47321 * 328.30750 * 3 2 1 25 25 H 1.09006 * 109.47409 * 88.30693 * 3 2 1 26 26 H 1.08993 * 109.47183 * 301.43619 * 5 4 2 27 27 H 1.09000 * 109.46778 * 61.43036 * 5 4 2 28 28 H 1.09003 * 109.47491 * 181.43038 * 5 4 2 29 29 H 0.96999 * 120.00188 * 180.02562 * 9 8 6 30 30 H 1.07996 * 119.99665 * 0.02562 * 15 14 4 31 31 H 1.08000 * 119.99489 * 179.97438 * 16 15 14 32 32 H 1.08004 * 119.99721 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.00290 * 179.72596 * 18 17 16 34 34 H 1.08002 * 119.99938 * 0.02562 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6113 -2.2388 0.9823 6 6 3.4966 -0.6397 1.1766 7 1 4.0110 -0.6030 2.1255 8 6 4.2134 -0.5710 0.0009 9 7 5.5012 -0.3059 0.0303 10 14 3.3555 -0.8545 -1.6341 11 1 2.9232 0.4491 -2.1989 12 1 4.2928 -1.5162 -2.5768 13 1 2.1682 -1.7219 -1.4261 14 6 1.4126 -0.2272 2.4187 15 6 1.5218 -0.9564 3.5881 16 6 0.9867 -0.4625 4.7631 17 6 0.3432 0.7609 4.7689 18 6 0.2297 1.4878 3.5986 19 6 0.7684 0.9958 2.4244 20 1 -0.3633 0.3110 0.9795 21 1 -0.3633 0.6929 -0.7590 22 1 -0.3634 -1.0036 -0.2204 23 1 2.9703 1.3864 -0.4874 24 1 1.3094 2.0240 -0.5399 25 1 2.0973 1.7216 1.0273 26 1 0.5264 -2.3276 0.9284 27 1 2.0541 -2.6352 0.0686 28 1 1.9800 -2.8028 1.8391 29 1 6.0054 -0.2572 -0.7969 30 1 2.0251 -1.9119 3.5836 31 1 1.0716 -1.0323 5.6765 32 1 -0.0752 1.1466 5.6868 33 1 -0.2769 2.4416 3.6022 34 1 0.6824 1.5652 1.5107 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587761.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = 55.088152 kcal Electronic energy + Delta-G solvation = -15762.578377 eV Core-core repulsion = 13468.476981 eV Total energy + Delta-G solvation = -2294.101397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36831 -38.21041 -34.57436 -33.30175 -31.41990 -30.35120 -29.01773 -26.47637 -25.08742 -23.49922 -23.12006 -20.76354 -18.58919 -18.06240 -16.64896 -16.56301 -15.70204 -15.52241 -15.31615 -14.68186 -14.65591 -14.38814 -14.13640 -13.58871 -13.17549 -12.86675 -12.82945 -12.58505 -12.36146 -12.33538 -11.93961 -11.76601 -11.46016 -11.30600 -11.10184 -10.58504 -9.64266 -9.31950 -8.84135 -8.21653 -6.31238 0.59864 0.64941 1.60251 1.61791 1.87559 2.59264 2.99653 3.07650 3.42451 4.08066 4.12907 4.24412 4.31261 4.44083 4.49351 4.68990 4.71142 4.76001 4.80027 4.87255 4.98114 5.00304 5.11498 5.23822 5.24409 5.29671 5.48275 5.55720 5.69781 5.75229 5.90208 6.00915 6.25748 6.42452 6.53962 6.79479 7.43134 8.89847 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.035699 B = 0.012450 C = 0.011459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.138727 B = 2248.482519 C = 2442.877444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.547 5.547 3 C 0.016 3.984 4 C 0.239 3.761 5 C -0.129 4.129 6 C -0.507 4.507 7 H 0.028 0.972 8 C 0.032 3.968 9 N -0.947 5.947 10 Si 1.002 2.998 11 H -0.283 1.283 12 H -0.358 1.358 13 H -0.237 1.237 14 C -0.081 4.081 15 C -0.134 4.134 16 C -0.126 4.126 17 C -0.138 4.138 18 C -0.127 4.127 19 C -0.155 4.155 20 H 0.055 0.945 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.261 0.739 30 H 0.111 0.889 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 2.076 4.532 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.272 5.272 3 C -0.131 4.131 4 C 0.150 3.850 5 C -0.186 4.186 6 C -0.545 4.545 7 H 0.046 0.954 8 C -0.167 4.167 9 N -0.586 5.586 10 Si 0.837 3.163 11 H -0.211 1.211 12 H -0.294 1.294 13 H -0.162 1.162 14 C -0.083 4.083 15 C -0.153 4.153 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.173 4.173 20 H 0.073 0.927 21 H 0.096 0.904 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.645 1.887 4.036 14.354 hybrid contribution 0.476 0.191 -0.109 0.524 sum -13.170 2.079 3.927 13.899 Atomic orbital electron populations 1.22896 0.86770 1.02857 1.02044 1.61784 1.08595 1.13754 1.43030 1.22677 0.99953 0.89285 1.01183 1.18055 0.92397 0.91243 0.83327 1.22069 0.99396 0.96010 1.01176 1.20807 0.89704 1.51420 0.92559 0.95367 1.25815 0.94771 0.92583 1.03520 1.70113 1.09731 1.49935 1.28865 0.85011 0.76297 0.78788 0.76185 1.21072 1.29350 1.16155 1.20767 0.95374 0.95178 0.96956 1.21128 1.00542 1.00516 0.93078 1.21383 0.98309 0.96992 0.97719 1.21376 1.00396 0.94988 0.98834 1.21407 1.00053 1.00526 0.92471 1.21744 0.99627 0.95962 0.99955 0.92661 0.90390 0.91469 0.94216 0.90556 0.93235 0.92933 0.93362 0.92894 0.93019 0.87142 0.84343 0.83603 0.83979 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 8.44 127.69 1.08 1.11 16 2 N -0.55 -22.51 1.29 -907.28 -1.17 -23.67 16 3 C 0.02 0.67 6.61 127.69 0.84 1.51 16 4 C 0.24 10.66 0.15 2.03 0.00 10.66 16 5 C -0.13 -5.31 7.68 71.98 0.55 -4.76 16 6 C -0.51 -28.45 7.75 25.60 0.20 -28.25 16 7 H 0.03 1.80 8.05 -2.91 -0.02 1.77 16 8 C 0.03 1.83 4.45 84.65 0.38 2.21 16 9 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 10 Si 1.00 50.16 22.67 68.60 1.56 51.71 16 11 H -0.28 -13.66 6.28 99.48 0.63 -13.03 16 12 H -0.36 -18.97 7.11 99.48 0.71 -18.26 16 13 H -0.24 -10.94 4.93 99.48 0.49 -10.45 16 14 C -0.08 -3.24 4.08 -19.87 -0.08 -3.32 16 15 C -0.13 -5.01 9.08 22.27 0.20 -4.80 16 16 C -0.13 -3.82 10.05 22.27 0.22 -3.59 16 17 C -0.14 -3.74 10.05 22.27 0.22 -3.52 16 18 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 19 C -0.16 -5.41 5.73 22.27 0.13 -5.28 16 20 H 0.06 1.70 4.45 -2.38 -0.01 1.69 16 21 H 0.08 2.12 7.72 -2.38 -0.02 2.10 16 22 H 0.07 2.07 6.84 -2.39 -0.02 2.05 16 23 H 0.04 1.90 4.79 -2.39 -0.01 1.89 16 24 H 0.08 2.53 7.54 -2.39 -0.02 2.51 16 25 H 0.05 2.08 4.88 -2.38 -0.01 2.07 16 26 H 0.05 1.87 6.65 -2.39 -0.02 1.85 16 27 H 0.05 2.10 5.38 -2.39 -0.01 2.09 16 28 H 0.05 2.11 6.69 -2.39 -0.02 2.10 16 29 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.11 4.20 6.76 -2.91 -0.02 4.18 16 31 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 32 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.14 4.62 3.65 -2.91 -0.01 4.61 16 Total: -1.00 -67.04 246.21 5.45 -61.59 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.80 Total: 11.49 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 3.97 Total: -41.46 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -0.87 Total: -83.33 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.56 Total: 51.71 kcal Total: -67.04 5.45 -61.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587761.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.676 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds