Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30551 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47186 * 239.99980 * 3 2 1 5 5 H 1.48509 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 120.00107 * 3 2 1 7 7 C 1.40633 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.38804 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.37979 * 126.24894 * 0.03863 * 9 7 2 11 11 C 1.45980 * 110.37710 * 179.97438 * 10 9 7 12 12 C 1.40666 * 131.48395 * 179.97438 * 11 10 9 13 13 C 1.37578 * 119.86249 * 180.02562 * 12 11 10 14 14 C 1.38709 * 120.38725 * 359.97438 * 13 12 11 15 15 Cl 1.73603 * 119.87977 * 179.97438 * 14 13 12 16 16 C 1.38763 * 120.24465 * 0.02562 * 14 13 12 17 17 C 1.37282 * 120.12598 * 0.04772 * 16 14 13 18 18 C 1.50934 * 132.72594 * 180.02562 * 17 16 14 19 19 H 0.96994 * 120.00183 * 0.02562 * 1 2 3 20 20 H 1.08001 * 124.80666 * 359.97179 * 10 9 7 21 21 H 1.08001 * 120.06771 * 359.97438 * 12 11 10 22 22 H 1.08004 * 119.80557 * 180.02562 * 13 12 11 23 23 H 1.07997 * 119.96714 * 180.02562 * 16 14 13 24 24 H 1.09002 * 110.21371 * 60.84988 * 18 17 16 25 25 H 1.08999 * 110.21486 * 299.01941 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 3.0932 1.6965 -1.2125 5 1 1.2744 2.7465 -0.0006 6 1 3.0932 1.6965 1.2125 7 6 2.0087 -1.2179 0.0005 8 1 3.0888 -1.2179 0.0001 9 6 1.3148 -2.4200 0.0005 10 6 -0.0568 -2.5703 -0.0007 11 6 -0.4130 -3.9859 -0.0009 12 6 -1.6623 -4.6324 -0.0015 13 6 -1.7224 -6.0069 -0.0010 14 6 -0.5577 -6.7601 -0.0004 15 17 -0.6489 -8.4937 0.0009 16 6 0.6802 -6.1331 0.0002 17 6 0.7583 -4.7625 0.0012 18 6 1.9235 -3.8031 0.0016 19 1 -0.4850 0.8400 -0.0004 20 1 -0.7662 -1.7559 -0.0014 21 1 -2.5725 -4.0510 -0.0015 22 1 -2.6821 -6.5023 -0.0018 23 1 1.5842 -6.7239 0.0002 24 1 2.5307 -3.9477 -0.8921 25 1 2.5300 -3.9475 0.8957 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = 13.824464 kcal Electronic energy + Delta-G solvation = -11867.341269 eV Core-core repulsion = 9642.774858 eV Total energy + Delta-G solvation = -2224.566411 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.82045 -36.10477 -35.01080 -33.06136 -30.21405 -28.69957 -25.90995 -25.14838 -21.25460 -20.00915 -19.06170 -16.52206 -15.61619 -15.31529 -14.27449 -14.15990 -13.46835 -13.00367 -12.62348 -12.18800 -11.99116 -11.66946 -11.50387 -11.22720 -10.60663 -10.46137 -10.29864 -10.16215 -9.82998 -9.78714 -9.67261 -8.44055 -7.92121 -7.06004 -6.88266 -4.50244 1.98909 2.32480 2.86516 2.89996 2.92232 2.99495 3.67697 3.69573 4.64884 5.29325 5.53029 5.72786 6.07214 6.14421 6.39583 6.42107 6.57415 6.63341 6.73270 6.90216 7.12843 7.14229 7.38607 7.58855 7.69476 8.03526 8.14466 8.56923 8.79369 8.93883 9.85255 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.082423 B = 0.006297 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.630177 B = 4445.483879 C = 4769.924154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.058 3.942 3 Si 0.925 3.075 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.393 4.393 8 H 0.082 0.918 9 C 0.060 3.940 10 C -0.345 4.345 11 C 0.030 3.970 12 C -0.177 4.177 13 C -0.084 4.084 14 C -0.124 4.124 15 Cl -0.115 7.115 16 C -0.067 4.067 17 C -0.170 4.170 18 C -0.050 4.050 19 H 0.286 0.714 20 H 0.153 0.847 21 H 0.111 0.889 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.075 0.925 25 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -3.150 0.000 3.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.164 4.164 3 Si 0.749 3.251 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.419 4.419 8 H 0.100 0.900 9 C 0.057 3.943 10 C -0.366 4.366 11 C 0.029 3.971 12 C -0.195 4.195 13 C -0.103 4.103 14 C -0.150 4.150 15 Cl -0.087 7.087 16 C -0.086 4.086 17 C -0.171 4.171 18 C -0.086 4.086 19 H 0.097 0.903 20 H 0.170 0.830 21 H 0.129 0.871 22 H 0.128 0.872 23 H 0.126 0.874 24 H 0.093 0.907 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.689 -3.117 0.000 3.192 hybrid contribution 0.223 0.394 -0.001 0.453 sum 0.912 -2.723 -0.001 2.872 Atomic orbital electron populations 1.69606 1.07956 1.29501 1.30286 1.26257 0.94988 1.02029 0.93129 0.86064 0.79870 0.78970 0.80217 1.18591 1.19897 1.18584 1.19109 0.94961 0.89894 1.37974 0.89982 1.19498 0.93876 0.90720 0.90177 1.22628 0.96100 0.91063 1.26832 1.20309 0.91483 0.95748 0.89571 1.20584 0.96899 0.92652 1.09401 1.20478 0.95861 0.93555 1.00398 1.20188 0.94839 0.81501 1.18518 1.98255 1.98781 1.13777 1.97886 1.19773 0.95176 0.93057 1.00592 1.20363 0.96966 0.92097 1.07626 1.19766 0.95354 0.92940 1.00589 0.90253 0.83019 0.87114 0.87164 0.87354 0.90679 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.10 10.18 55.59 0.57 -17.53 15 2 C 0.06 1.33 5.51 -17.19 -0.09 1.24 15 3 Si 0.93 16.92 29.57 -169.99 -5.03 11.89 15 4 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 6 H -0.26 -4.72 7.11 56.52 0.40 -4.31 15 7 C -0.39 -9.48 9.36 -38.47 -0.36 -9.84 15 8 H 0.08 1.81 7.86 -52.48 -0.41 1.40 15 9 C 0.06 1.51 6.07 -104.31 -0.63 0.88 15 10 C -0.34 -8.99 9.85 -36.58 -0.36 -9.35 15 11 C 0.03 0.72 6.20 -105.02 -0.65 0.07 15 12 C -0.18 -3.86 10.13 -38.91 -0.39 -4.25 15 13 C -0.08 -1.68 9.79 -39.65 -0.39 -2.07 15 14 C -0.12 -2.48 6.34 -39.21 -0.25 -2.72 15 15 Cl -0.12 -1.98 28.95 -51.86 -1.50 -3.48 15 16 C -0.07 -1.38 9.80 -39.74 -0.39 -1.77 15 17 C -0.17 -3.86 6.35 -103.99 -0.66 -4.52 15 18 C -0.05 -1.10 6.69 -28.72 -0.19 -1.29 15 19 H 0.29 6.18 8.29 -40.82 -0.34 5.84 15 20 H 0.15 4.15 5.47 -52.49 -0.29 3.87 15 21 H 0.11 2.24 8.06 -52.49 -0.42 1.82 15 22 H 0.11 1.91 8.06 -52.48 -0.42 1.49 15 23 H 0.11 1.99 8.06 -52.49 -0.42 1.57 15 24 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 25 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 LS Contribution 238.18 15.07 3.59 3.59 Total: -1.00 -25.42 238.18 -8.69 -34.11 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -1.95 Total: 5.05 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -4.37 Total: -33.64 kcal Atomic # 7 Polarization: -18.10 SS G_CDS: 0.57 Total: -17.53 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -1.50 Total: -3.48 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -25.42 -8.69 -34.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.935 kcal (2) G-P(sol) polarization free energy of solvation -25.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds